PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00030217001
Common NameGSBRNA2T00030217001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TCP
Protein Properties Length: 359aa    MW: 39146.6 Da    PI: 8.3134
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00030217001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP123.52.4e-38491772134
                  TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaa 91 
                           g+kdrhsk+ T++g+RdRRvRls+++a +f+dLqd+LG+d++sk++eWL+++a+ +i el+++ ++++  ++++++++++     + aa
  GSBRNA2T00030217001  49 SGGKDRHSKVWTSKGPRDRRVRLSVSTALQFYDLQDRLGLDQPSKAVEWLIKAAEDSISELPSL-NNTNFPMTDDENQNQT----VTGAA 133
                          689*************************************************************.4444344333333333....34566 PP

                  TCP  92 ksaakskksqksaasalnlak.esrakarararertrekmrikn 134
                          ksa +s++++++++s l+l++ e r kar+rarert+++ + ++
  GSBRNA2T00030217001 134 KSACSSNSDTSKNSSGLSLSRsELRDKARERARERTAKETKERD 177
                          666677888888888999*999***************9988775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.7E-3350175IPR005333Transcription factor, TCP
PROSITE profilePS5136930.94251109IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.205155176IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:1903508Biological Processpositive regulation of nucleic acid-templated transcription
GO:2000306Biological Processpositive regulation of photomorphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MFPKTGDDVI IGDLMKTNNG DVVDNNNNSN RLSRWHHNSS RIIRVSRASG GKDRHSKVWT  60
SKGPRDRRVR LSVSTALQFY DLQDRLGLDQ PSKAVEWLIK AAEDSISELP SLNNTNFPMT  120
DDENQNQTVT GAAKSACSSN SDTSKNSSGL SLSRSELRDK ARERARERTA KETKERDHTG  180
SFTDLLNSGS DPVNVNRQWM VSSSSPAQME YLSSGLILGS GQTHFPIQTN AHPFSDHHHH  240
PQEFSFVPDH LISPAGSNGG GAFNLDFNMS TTSGAGTAVA SAGFSGFNRG TLQSNSSNHH  300
QQSFLANLQR FSSSEGGGGP QFLFGALPAE NHHPNSHQFQ LYYENGCRNS DQKGKGKN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A8e-2356110155Putative transcription factor PCF6
5zkt_B8e-2356110155Putative transcription factor PCF6
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.92170.0flower| leaf| seed
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: During flower development, first observed throughout the floral meristem. Later expressed in rapidly growing floral primordia. Detected to a lower extent in vegetative primordia. During flower development, first observed throughout the floral meristem. Expressed during ovule development (PubMed:25378179). {ECO:0000269|PubMed:10363373, ECO:0000269|PubMed:25378179}.
UniprotTISSUE SPECIFICITY: Expressed in cotyledons, particularly in the vascular region, in leaves, roots, buds, flowers and immature siliques. {ECO:0000269|PubMed:17307931}.
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). Participates in ovule develpment (PubMed:25378179). Promotes light-regulated transcription of CHS, CAB, HYH and HY5. Regulates positively photomorphogenesis (e.g. hypocotyl elongation inhibition and cotyledon opening in response to blue light) (PubMed:26596765). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179, ECO:0000269|PubMed:26596765}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00006PBMTransfer from 493022Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00030217001
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the miRNA miR-JAW (PubMed:12931144). Induced by blue light. Stabilized by light but labile in darkness due to proteasome-dependent proteolysis (at protein level) (PubMed:26596765). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:26596765}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3527970.0AK352797.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-07-O21.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013607827.10.0PREDICTED: transcription factor TCP2
RefseqXP_013607831.10.0PREDICTED: transcription factor TCP2
RefseqXP_013607836.10.0PREDICTED: transcription factor TCP2
RefseqXP_013607840.10.0PREDICTED: transcription factor TCP2
RefseqXP_013607845.10.0PREDICTED: transcription factor TCP2
SwissprotQ93V430.0TCP2_ARATH; Transcription factor TCP2
TrEMBLA0A078J9T50.0A0A078J9T5_BRANA; BnaC01g40850D protein
TrEMBLA0A0D3A4310.0A0A0D3A431_BRAOL; Uncharacterized protein
STRINGBo1g019520.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76152539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.21e-127TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]
  3. Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C
    Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2018. 176(2): p. 1694-1708
    [PMID:29133375]