PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00027624001
Common NameGSBRNA2T00027624001, LOC106377941
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family SRS
Protein Properties Length: 316aa    MW: 34159.3 Da    PI: 7.8121
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00027624001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702225.31.2e-69932442154
               DUF702   2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqsalsstk 90 
                          rs t+sC+dCGnqakkdC+h+RCRtCCksrgfdC+thv+stW+p+a+rrerqqql++++s     +  ++ +kr+r++   +   +ss++
  GSBRNA2T00027624001  93 RSITISCRDCGNQAKKDCTHMRCRTCCKSRGFDCSTHVRSTWIPVARRRERQQQLHMSTSGGGGGSgGSSIPKRHRDT---TLPETSSSR 179
                          67899****************************************************999887766578888898886...667778889 PP

               DUF702  91 lssaeskkeletsslPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGlee 154
                          l+s ++  e+ ++s+P+evss+a+frcvr+s+vdd g+ ++aYqt+v+igGh+fkGiLydqG+e+
  GSBRNA2T00027624001 180 LPSDSAGLEMGKASFPPEVSSDALFRCVRMSGVDDgGDGQYAYQTTVNIGGHLFKGILYDQGPES 244
                          999********************************8899************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051423.4E-6296243IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016233.1E-2798140IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016244.5E-28194242IPR006511Lateral Root Primordium type 1, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010252Biological Processauxin homeostasis
GO:0048479Biological Processstyle development
GO:0048480Biological Processstigma development
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MAGMFSLGGN NNNNNNNNNG YQEEGNQQQQ KTNWVWYRSN TNTNNINPSS SVWQIPPEQQ  60
ILMHHHQPHP QQQSIDLYPG HQIDVSDIAT SSRSITISCR DCGNQAKKDC THMRCRTCCK  120
SRGFDCSTHV RSTWIPVARR RERQQQLHMS TSGGGGGSGG SSIPKRHRDT TLPETSSSRL  180
PSDSAGLEMG KASFPPEVSS DALFRCVRMS GVDDGGDGQY AYQTTVNIGG HLFKGILYDQ  240
GPESSYMSGG SGGSDHHSSS AGGGNTFNTP AIADGGRGGS SAMFVDPNSS SYYSSNMMTM  300
FVPPGTQFYQ NPPRS*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in the apical parts of the developing gynoecium. In carpels, first observed at late development stage in the most apical parts of the open-ended gynoecium. Accumulates in differentiating style and stigmatic tissues. Not expressed in the stigma after fertilization but remains in the style until full silique maturation. Also detected in anthers. In seedlings, present in the shoot apex and in cotyledons, leaf primordia, stipules, hydathodes and in primordia of lateral roots. Detected in developing trichomes and in leaf and pedicel attachment sites. {ECO:0000269|PubMed:12361963}.
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, cauline leaves, flowers and siliques. {ECO:0000269|PubMed:12361963}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:12361963, ECO:0000269|PubMed:16740145, ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18811619}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00027624001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2052650.0GU205265.1 Brassica rapa subsp. pekinensis stylish 2b (STY2b) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013673609.10.0protein SHI RELATED SEQUENCE 2
SwissprotO655171e-149SRS2_ARATH; Protein SHI RELATED SEQUENCE 2
TrEMBLA0A078J5W30.0A0A078J5W3_BRANA; BnaA03g59180D protein
STRINGBra017754.1-P1e-180(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM136481727
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36260.11e-119Lateral root primordium (LRP) protein-related
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Estornell LH,Landberg K,Cierlik I,Sundberg E
    SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 150
    [PMID:29491878]