PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00027113001
Common NameGSBRNA2T00027113001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TCP
Protein Properties Length: 349aa    MW: 38691.4 Da    PI: 7.0636
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00027113001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP111.51.2e-3426126189
                  TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg. 88 
                          a+g+kdrhsk+ T++g+RdRRvRl a++a++f+d+qd+L +d++sk+++WL+++ak+ai++l  t+ ++++++ +++ssss+ +    + 
  GSBRNA2T00027113001  26 ATGRKDRHSKVFTSKGPRDRRVRLAAHTAIQFYDVQDRLQYDRPSKAVDWLIKKAKAAIDKLETTQEPPENDTtKPGSSSSEPN-LADTq 114
                          589**************************************************************9***999964444444444.11112 PP

                  TCP  89 ...........k 89 
                                     +
  GSBRNA2T00027113001 115 thfvaanldpeD 126
                          334445444431 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036345.7E-3127124IPR005333Transcription factor, TCP
PROSITE profilePS5136930.3462987IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MGLKGYSAGD GVGEIIEVPG GHIIRATGRK DRHSKVFTSK GPRDRRVRLA AHTAIQFYDV  60
QDRLQYDRPS KAVDWLIKKA KAAIDKLETT QEPPENDTTK PGSSSSEPNL ADTQTHFVAA  120
NLDPEDAMKT FFPATTRGGG TNMNFQNYPH HHDADNIVSR TTTTPNLNQD LGLSLHPFQG  180
NNINSTVVPE TNNFATAHFE TFGRISGWNH HDLTMTSSSS PSEQQQEQER GNGGFMVNLH  240
HHQPSMMTLL NSQQQQVFLG GHQQQQQRGT LQSSLFPHSF RSWDHHHQTT SDNHHHHHHN  300
QASPVMFASS SQYGSHGMMM MQGLSFPIHG EEPTQPNSSS SPPPNSHL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-203487154Putative transcription factor PCF6
5zkt_B2e-203487154Putative transcription factor PCF6
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: First observed in the distal and middle regions of cotyledons of heart-shaped embryos. Later localized in bending cotyledon, and mature embryos, but no signals were detected in the presumptive shoot apical meristem (SAM) and the boundary region during embryogenesis. Expressed during ovule development (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}.
UniprotTISSUE SPECIFICITY: Mostly detected in lateral organs, such as leaves and flowers. Expressed in cotyledons, particularly in the vascular region, in leaves, roots, stems, buds, flowers and immature siliques. {ECO:0000269|PubMed:11158442, ECO:0000269|PubMed:17307931}.
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00027113001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013732230.10.0transcription factor TCP10-like
RefseqXP_013732231.10.0transcription factor TCP10-like
RefseqXP_022568818.10.0transcription factor TCP10-like
SwissprotO822771e-145TCP10_ARATH; Transcription factor TCP10
TrEMBLA0A078GHE10.0A0A078GHE1_BRANA; BnaC04g13290D protein
STRINGBo4g053680.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM141581924
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31070.11e-127TCP domain protein 10
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]
  2. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]
  3. Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C
    Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2018. 176(2): p. 1694-1708
    [PMID:29133375]