PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00026639001
Common NameGSBRNA2T00026639001
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family CO-like
Protein Properties Length: 370aa    MW: 41052.2 Da    PI: 7.9598
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00026639001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box33.39.7e-111358342
             zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                         +r+C+++ +k++++fC  ++ +lC++C ++ H+       H++vpl
  GSBRNA2T00026639001 13 ARTCDNCLKKRAHWFCAADEAFLCQSCDTSVHSAnllarrHERVPL 58
                         689*****************************66899999*99986 PP
2CCT66.48e-23311354144
                  CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                          Rea+++RY+eK+ktR F K+irYe+RK +Ae++pR+KGrFvk+a
  GSBRNA2T00026639001 311 REARVSRYREKKKTRSFTKTIRYEVRKLNAENKPRMKGRFVKRA 354
                          9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.3E-121158IPR000315B-box-type zinc finger
PROSITE profilePS5011911.591158IPR000315B-box-type zinc finger
PfamPF006438.4E-101358IPR000315B-box-type zinc finger
CDDcd000213.82E-111458No hitNo description
PROSITE profilePS5101715.398311353IPR010402CCT domain
PfamPF062032.7E-17311353IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 370 aa     Download sequence    Send to blast
MKSLANGVRA KTARTCDNCL KKRAHWFCAA DEAFLCQSCD TSVHSANLLA RRHERVPLKD  60
TSPQQEAPTW HHGFTRKPRT PRGSGKRNNS STFHDMVPEI TAEGQTDSSE VEGPLICQVP  120
VLDPMVVEPK IKFPTMRSGI DGHEDEDKDE SCLNEIFPTN MEVEDFAADV ETLLGHGLDK  180
ESYTMEELGL SNTEMLKKDE IEDKETKAMN MDIEICDDDQ GNRDGTMPNG ECVQAKEEKK  240
KNVLMLSLDY DQVISTWGGQ GLPWTSGGPP DIDINISGSP VVSKRDNGRK SRKKRRGGGR  300
LPSSVVGDGG REARVSRYRE KKKTRSFTKT IRYEVRKLNA ENKPRMKGRF VKRASLAASA  360
GNSPLGVNN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00026639001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022553991.10.0zinc finger protein CONSTANS-LIKE 16-like
SwissprotQ8RWD01e-159COL16_ARATH; Zinc finger protein CONSTANS-LIKE 16
TrEMBLA0A078GGU30.0A0A078GGU3_BRANA; BnaCnng04690D protein
STRINGBo3g138650.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24672767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.11e-152B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]