PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00006103001
Common NameGSBRNA2T00006103001, LOC106390338
Organism
Brassica napus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family TCP
Protein Properties Length: 326aa    MW: 34668.3 Da    PI: 10.0344
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00006103001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP116.24.3e-3661148290
                  TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.........eaesssssa 82 
                          + k+ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+ +d++ti WLl++a+pai+++tgt++ +a ++         +        
  GSBRNA2T00006103001  61 PLKRASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHRSDGETIRWLLENAEPAIIAATGTGTVPAIAMsvngtlkipT-------- 142
                          57999***********************************************************888884442111111111........ PP

                  TCP  83 snsssgka 90 
                             +++++
  GSBRNA2T00006103001 143 T--TNADS 148
                          1..11111 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036348.8E-3066146IPR005333Transcription factor, TCP
PROSITE profilePS5136927.18767121IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0048364Biological Processroot development
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MATIKHHEDE RLRAVDLTSK PFEVNNAVSL EPKTEPSLES SSHQLQVPSI SMSLAPPSRP  60
PLKRASTKDR HTKVEGRGRR IRMPATCAAR IFQLTRELGH RSDGETIRWL LENAEPAIIA  120
ATGTGTVPAI AMSVNGTLKI PTTTNADSDV GDNSAKKRRK RPSNSEYIDI NEAVTVSVSS  180
GLAPISSGLA PVSTVAQQTL PQGMIPMWAI PSNAVIPAVG AFFLVPHVAG PTNQPQMLAF  240
PAAPPSSYVA AVQQASLMAR PPFVSVPDVT RSTPSVMAPS SSSGVTNGGS SSSTTNMLRD  300
FSLEIYEKQE LHQFMSTTTA RSSNH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155159KKRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.281230.0microspore-derived embryo
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in archespores, pollen mother cell, ovule primordia and megaspore mother cells. {ECO:0000269|PubMed:25527103}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00316DAPTransfer from AT2G45680Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00006103001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895801e-122AC189580.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH011O17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013686234.10.0transcription factor TCP9
SwissprotO646471e-146TCP9_ARATH; Transcription factor TCP9
TrEMBLA0A078FWV30.0A0A078FWV3_BRANA; BnaC04g04400D protein
STRINGBo4g024860.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM98312434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.11e-144TCP family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]