PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00004890001
Common NameGSBRNA2T00004890001, LOC106434822
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Trihelix
Protein Properties Length: 298aa    MW: 33414.8 Da    PI: 10.2136
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00004890001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix74.41.9e-2364144286
             trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                          Wt++e+l+Li+ ++e++ +++rg lk ++Wee+s  + ++ g+ers++qC++k+e+l+kr+++++++++       s +p+++q+e
  GSBRNA2T00004890001  64 WTEDETLLLIDSYKEKWYAVGRGPLKSNQWEEISVSVsARSGVERSATQCRHKMEKLRKRFRAERQSMGPI-----SIWPFYSQME 144
                          ***********************************998899****************************84.....68*******8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.5E-2064146No hitNo description
PROSITE profilePS500906.6964121IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MATPSPTPSP PPPPPSDSNP NPPQQNPPPS NSTAIQTPRS PQTTVVALGA STSAFARKTQ  60
PVLWTEDETL LLIDSYKEKW YAVGRGPLKS NQWEEISVSV SARSGVERSA TQCRHKMEKL  120
RKRFRAERQS MGPISIWPFY SQMEELDSNP APISARPLTR LPPPSNHYAE DEDDDDDYED  180
ESLNKSRSIN HIVRRPGTVN RFAGVGGGLL QWGQKERSKR KKKDEGGGGE RRMKGARAVA  240
YEIRAFAEKT MVMENKKMEF AKETVKLRKE MEMKRLKLIQ SSQAQLLQFL NTSFASF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.143820.0leaf| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00004890001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013731132.10.0trihelix transcription factor ASIL1
TrEMBLA0A078IQB40.0A0A078IQB4_BRANA; BnaCnng21880D protein
STRINGBo7g031620.11e-180(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM102812232
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24860.11e-122Trihelix family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]