PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi3g50213.1.p

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

Trihelix

Protein Properties

Length: 1392aa MW: 152255 Da PI: 4.2208

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi3g50213.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	93.7	1.8e-29	83	167	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+++e+laLie+r+em++ +r++ lk+p Weevs+k+++rg++rs+k+Ckek+en+ k+yk+ ke + +r ++ ++++yf qlea Bradi3g50213.1.p 83 RWPHDETLALIEIRSEMDSVFRNAGLKAPVWEEVSRKLAQRGYRRSAKKCKEKFENVDKYYKRSKEDRAGR--PDNKSYRYFAQLEA 167 8******************************************************************97..45557****985 PP
2	trihelix	68.7	1.2e-21	378	452	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW+k+ev aLi++r e++e ++ k+ lW+++s++mr g++rs+k+Ckekwen+nk++kk + +tcpyf+qle Bradi3g50213.1.p 378 RWPKEEVDALIQLRMEKDELWQDLGGKALLWDDISAAMRNMGYHRSSKRCKEKWENINKYFKKDA-----------KTCPYFHQLE 452 8************************************************************9843...........3577777776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	0.7	80	142	IPR001005	SANT/Myb domain
CDD	cd12203	1.07E-27	82	147	No hit	No description
PROSITE profile	PS50090	6.806	82	140	IPR017877	Myb-like domain
Pfam	PF13837	1.6E-21	83	168	No hit	No description
SMART	SM00717	2.1E-4	375	437	IPR001005	SANT/Myb domain
CDD	cd12203	2.04E-23	377	440	No hit	No description
PROSITE profile	PS50090	7.433	378	435	IPR017877	Myb-like domain
Pfam	PF13837	1.1E-14	378	453	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 1392 aa Download sequence Send to blast
MAGSVPSPQP PPVPAAVSLS LVPSPPSSVQ TPPSVTNSEV LPAAGTGAST GHGVINLNDI 60 NLVDGLRGRS TGEAGAGGSG CSRWPHDETL ALIEIRSEMD SVFRNAGLKA PVWEEVSRKL 120 AQRGYRRSAK KCKEKFENVD KYYKRSKEDR AGRPDNKSYR YFAQLEALHA ADPPQHQAAP 180 MAMAAAAARP LAMAHPGAGL LLPDHGFWSN TEPDSDNESD DEEEGGGGIS YKMLTVLVKR 240 LIKQVTKRQD AMQQLLLDKL ERWEAERTKR EQAWRAHELT RIKCEWEQLA QERATGATRD 300 AALIMLLQRI ITSGNSVSLP PSFSSLAAAN KQKAPVIQNT SQIHHHIEAL IASMQSVVAS 360 RSVGESSEGD NNGSGMPRWP KEEVDALIQL RMEKDELWQD LGGKALLWDD ISAAMRNMGY 420 HRSSKRCKEK WENINKYFKK DAKTCPYFHQ LEDIYRKRQQ FTMTGNGGSS STAPDDTTVT 480 VTFSEQPVLE QNHQCDLQGN IGNNFGMMVN DGGENSHASP CNDGHTAMHT TVVDDIAINE 540 EENTHRELED KINNDLGMVE NIEGGNLHTT LSNDGDTAMV TVVLDDSSIN KEENPHRELR 600 VRISNKFNMM GNDGGENLLA PSRNGGDTPM DNNMLDDDAK NKENPSRELE VKISKDFSMV 660 DNGGGENLHA PRSKDGATTV VTAVLDESAI NIEENLLAPP CNGGDMAIDT GVIDGSSTNK 720 ENRSRELESK ISNDFIAMDN VGGENLLSPP SNNDDTVVDT SVLDESAINK DKPSCAIEGK 780 INNDFAMRDN IGGENLIAPS NNGDTIVDTT LLHDSVVNKE ENPLYEHEVN INNHFSMMGN 840 GGVENLLAPP NNNGEMATDT VVLDDNAINK EENPSQELEG TISNDFAMII NGGGENLLSP 900 LRNDGDTTVD TTVLDGSIVN KEENPGHEHE VNISNHFGMM GSSGRENLLV PPSNNGEMAT 960 DTVVLDDNAI NKEENPLREL KGNISNDFAM MINGRGENLL SPPRNDDDTT VDTAVLDESA 1020 IKKEEDPWRN LEGNINNDFN MIGNDGEENL LAAPCNGVDT AMDATVLYDN AINHEKNPLR 1080 ELEDKTINEF AMMENSGEEK LLASSNNGGD TAMDTTMLDD STINKEENPR RELKGNVSND 1140 FDMMGSDEGE NLLAPPSNSD DIAMDTSVLD DIPINKENPL HELGGNINNE FVMMGNDGGE 1200 NLFAPPSHNC DTTMDTAVLD DSAINKEENP WRELEGNIRS DFSMMDNGGG ENLLAPPNNI 1260 GDKAMDTTVL DDSAINKENP WRELESKINN DFKMMDNGGW ENLLAPPSNN DDTTMDTGVL 1320 DDNPVNKKKE DIVMTTEANM QPQQKDFTDW EETCSDDIEG NYTHEDRDNG GGSSDNENDK 1380 MKCIVELRKQ Q*

Sequence ? help Back to Top

Protein Sequence Length: 1392 aa Download sequence Send to blast

MAGSVPSPQP PPVPAAVSLS LVPSPPSSVQ TPPSVTNSEV LPAAGTGAST GHGVINLNDI  60
NLVDGLRGRS TGEAGAGGSG CSRWPHDETL ALIEIRSEMD SVFRNAGLKA PVWEEVSRKL  120
AQRGYRRSAK KCKEKFENVD KYYKRSKEDR AGRPDNKSYR YFAQLEALHA ADPPQHQAAP  180
MAMAAAAARP LAMAHPGAGL LLPDHGFWSN TEPDSDNESD DEEEGGGGIS YKMLTVLVKR  240
LIKQVTKRQD AMQQLLLDKL ERWEAERTKR EQAWRAHELT RIKCEWEQLA QERATGATRD  300
AALIMLLQRI ITSGNSVSLP PSFSSLAAAN KQKAPVIQNT SQIHHHIEAL IASMQSVVAS  360
RSVGESSEGD NNGSGMPRWP KEEVDALIQL RMEKDELWQD LGGKALLWDD ISAAMRNMGY  420
HRSSKRCKEK WENINKYFKK DAKTCPYFHQ LEDIYRKRQQ FTMTGNGGSS STAPDDTTVT  480
VTFSEQPVLE QNHQCDLQGN IGNNFGMMVN DGGENSHASP CNDGHTAMHT TVVDDIAINE  540
EENTHRELED KINNDLGMVE NIEGGNLHTT LSNDGDTAMV TVVLDDSSIN KEENPHRELR  600
VRISNKFNMM GNDGGENLLA PSRNGGDTPM DNNMLDDDAK NKENPSRELE VKISKDFSMV  660
DNGGGENLHA PRSKDGATTV VTAVLDESAI NIEENLLAPP CNGGDMAIDT GVIDGSSTNK  720
ENRSRELESK ISNDFIAMDN VGGENLLSPP SNNDDTVVDT SVLDESAINK DKPSCAIEGK  780
INNDFAMRDN IGGENLIAPS NNGDTIVDTT LLHDSVVNKE ENPLYEHEVN INNHFSMMGN  840
GGVENLLAPP NNNGEMATDT VVLDDNAINK EENPSQELEG TISNDFAMII NGGGENLLSP  900
LRNDGDTTVD TTVLDGSIVN KEENPGHEHE VNISNHFGMM GSSGRENLLV PPSNNGEMAT  960
DTVVLDDNAI NKEENPLREL KGNISNDFAM MINGRGENLL SPPRNDDDTT VDTAVLDESA  1020
IKKEEDPWRN LEGNINNDFN MIGNDGEENL LAAPCNGVDT AMDATVLYDN AINHEKNPLR  1080
ELEDKTINEF AMMENSGEEK LLASSNNGGD TAMDTTMLDD STINKEENPR RELKGNVSND  1140
FDMMGSDEGE NLLAPPSNSD DIAMDTSVLD DIPINKENPL HELGGNINNE FVMMGNDGGE  1200
NLFAPPSHNC DTTMDTAVLD DSAINKEENP WRELEGNIRS DFSMMDNGGG ENLLAPPNNI  1260
GDKAMDTTVL DDSAINKENP WRELESKINN DFKMMDNGGW ENLLAPPSNN DDTTMDTGVL  1320
DDNPVNKKKE DIVMTTEANM QPQQKDFTDW EETCSDDIEG NYTHEDRDNG GGSSDNENDK  1380
MKCIVELRKQ Q*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi3g50213.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010235774.2	0.0	LOW QUALITY PROTEIN: uncharacterized protein LOC100830336
TrEMBL	A0A2K2D4D9	0.0	A0A2K2D4D9_BRADI; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP606	38	175
Representative plant	OGRP663	15	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76890.2	2e-41	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Bradi3g50213.1.p