PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g23800.1.p
Common NameBRADI_3g23800, LOC100826455
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family CAMTA
Protein Properties Length: 1022aa    MW: 113728 Da    PI: 6.2859
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g23800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-11734.2e-54211382118
              CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenpt 93 
                       lke ++rwl+++ei++iL+n+++++++ e++++p+sgsl+L++rk++ryfrkD ++w+kkkdgktv+E+he+LK g+++vl+cyYah+e+n +
  Bradi3g23800.1.p  21 LKEaQQRWLRPTEICEILKNYRNFRIAPEPPNKPPSGSLFLFDRKVLRYFRKDAHNWRKKKDGKTVKEAHERLKSGSIDVLHCYYAHGEDNGN 113
                       45559**************************************************************************************** PP

              CG-1  94 fqrrcywlLeeelekivlvhylevk 118
                       fqrr+yw+Lee++ +ivlvhyle+k
  Bradi3g23800.1.p 114 FQRRTYWMLEEDFMHIVLVHYLETK 138
                       **********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143780.63917143IPR005559CG-1 DNA-binding domain
SMARTSM010761.6E-7220138IPR005559CG-1 DNA-binding domain
PfamPF038595.3E-4823136IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.103.9E-5436523IPR013783Immunoglobulin-like fold
PfamPF018331.4E-5437516IPR002909IPT domain
SuperFamilySSF812962.74E-15437523IPR014756Immunoglobulin E-set
SuperFamilySSF484034.35E-16630733IPR020683Ankyrin repeat-containing domain
CDDcd002045.78E-13633731No hitNo description
Gene3DG3DSA:1.25.40.207.9E-17633735IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029717.449639733IPR020683Ankyrin repeat-containing domain
SMARTSM002480.013672701IPR002110Ankyrin repeat
PROSITE profilePS500888.736672704IPR002110Ankyrin repeat
SMARTSM002481800711740IPR002110Ankyrin repeat
SuperFamilySSF525409.56E-8833885IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.35834856IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.224835864IPR000048IQ motif, EF-hand binding site
PfamPF006120.027836855IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0022857879IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.56858882IPR000048IQ motif, EF-hand binding site
PfamPF006122.0E-4860879IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001077Molecular Functiontranscriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1022 aa     Download sequence    Send to blast
MAAPEARRFA VVPHLDIEQI LKEAQQRWLR PTEICEILKN YRNFRIAPEP PNKPPSGSLF  60
LFDRKVLRYF RKDAHNWRKK KDGKTVKEAH ERLKSGSIDV LHCYYAHGED NGNFQRRTYW  120
MLEEDFMHIV LVHYLETKGG KSSRARGDSD MLQAAAADSP LSQIPSQTIE GESSLSGQAS  180
EYEETESDIY SGGAGYDSFT QMQQLQNGIG PMIHTSINSS YAPASSIGAY QGQQHAMAHN  240
TNFYSSSHDN SSVVPNDSSL GLVMSGRESQ TDLSSWNEMM RSDRCSIQMP RQLPVPSEQG  300
TSAEGVGVEY LTFDEVYFDG LGLNDISAAG ADGESSWQYP SAIGDLSAME NNFPQNDRPL  360
EAVISQPFLK TKSSNLSDIL KDSFKKSDSF TRWMSKELPD VEDSQIQSSS GAYWNTEEAL  420
DQFTVAPMLS QDQLFSIVDF SPSWTYAVSK TKVFVTGRFL NANEATERCK WSCMFGEVEV  480
PAEISADGMT LHCYSPPHKP GRVPFYITCS NRLACSEVRE FEFLASDPQY MDAPSPHGAT  540
NKIYFQIRLD KLLSLGQDAY KATISNPSLE MVDLSKKICS LMENSDEWSK LLKLADDNEL  600
LTDDQQDQFA ENLIKEKLHI WLLHKVGDGG KGPSVLDYEG QGVLHLAAAL GYDWAIRPTV  660
TSGVNINFRD VHGWTALHWA AFCGRERTVV ALIALGAAPG ALTDPTPDFP SGSTPADLAS  720
ANGHRGISGF LAESSLTSHL QALNLKEANM AEISGLPGIG DVTERSASQP ASGDSLGAVR  780
NAAQAAARIY QVFRVQSFQR KQAVQYKDEK GGISDEHALS LLSFKSSKPG KLDPRHAAAS  840
RIQNKFRGWK GRKEFLLIRQ RIVKIQAHVR GHQVRKHYRK IVWSVGIVEK IILRWRRRGA  900
GLRGFRSAEG AMGSSSSGIC TNLITDKPAG DDYDFLQEGR KQTEDRLQKA LARVKSMAQY  960
PEARDQYRRI LTVVSKMQES QATQEKMLED PTEMDEGHFM SEFKELWDDD APIPGYSSLH  1020
N*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25627216, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g23800.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:25627216}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003571742.10.0calmodulin-binding transcription activator 3 isoform X2
SwissprotQ6NPP40.0CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBLI1I3P90.0I1I3P9_BRADI; Uncharacterized protein
STRINGBRADI3G23800.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60838140
Representative plantOGRP5621565
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]