PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g17810.1.p
Common NameBRADI_3g17810, LOC100826143
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NF-YC
Protein Properties Length: 243aa    MW: 26248.2 Da    PI: 4.5642
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g17810.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC125.81.6e-3979178297
             NF-YC   2 lksfwekq...iekatdfknhelPlarikkilkad.edvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifd 90 
                       l+ fw++    ie+++++k h+lPlarikki+ka  ed++mi++eaP ll+ka e+fi eltlrswl++++n+rrtl+k+di aav+r ++fd
  Bradi3g17810.1.p  79 LQDFWTETlaeIEHMSEIKPHSLPLARIKKIMKASgEDIRMIASEAPGLLAKASEIFIQELTLRSWLETRDNNRRTLQKNDIGAAVSRNETFD 171
                       899**9987779*********************85499******************************************************* PP

             NF-YC  91 flvdivp 97 
                       flvd++ 
  Bradi3g17810.1.p 172 FLVDVMQ 178
                       ****976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.68E-2565173IPR009072Histone-fold
Gene3DG3DSA:1.10.20.102.8E-2893165IPR009072Histone-fold
PfamPF008082.9E-18100164IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MDGHSQPWAE ADATNVNSTP VAYVAPGTVS GAAPAGAAAF PAGTVFAAGS SGGPVVYAAT  60
PLQQVRHPLQ QEDQHQQKLQ DFWTETLAEI EHMSEIKPHS LPLARIKKIM KASGEDIRMI  120
ASEAPGLLAK ASEIFIQELT LRSWLETRDN NRRTLQKNDI GAAVSRNETF DFLVDVMQDN  180
GVGFPSATVQ TAVLGMSTFG MYYGNQQQPV PFAWLQPEHQ PPPYNGEQQQ QPPPPSSDGQ  240
DE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B1e-3589177693NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151157RRTLQKN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:26542958). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269|PubMed:26542958}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g17810.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases in the middle of daytime, peaks around the end of the light period and gradually decreases during the dark period and beginning of daylight. {ECO:0000269|PubMed:26542958}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003571526.11e-179nuclear transcription factor Y subunit C-2
SwissprotQ655V52e-42NFYC4_ORYSJ; Nuclear transcription factor Y subunit C-4
TrEMBLI1I1W51e-178I1I1W5_BRADI; Uncharacterized protein
STRINGBRADI3G17810.11e-179(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2093627
Representative plantOGRP31517117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.23e-43nuclear factor Y, subunit C2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Kim SK, et al.
    OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice.
    Planta, 2016. 243(3): p. 563-76
    [PMID:26542958]