PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi3g00697.1.p
Common NameBRADI_3g00697, LOC100824700
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family Trihelix
Protein Properties Length: 759aa    MW: 80526.2 Da    PI: 6.31
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi3g00697.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix96.62.3e-30556641186
          trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergf.erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                       rW+kqev aLi++r+ +e+r+++  lk+plWeevs++m++ g+  rs+k+Ckekwen+nk+++k ke+ kkr + + +tcpyfd+l+
  Bradi3g00697.1.p 556 RWPKQEVEALIRVRSGLERRFQEPGLKGPLWEEVSARMAAAGYgGRSAKRCKEKWENINKYFRKAKESGKKR-PAHAKTCPYFDELN 641
                       8******************************************99*************************98.99999*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.758549614IPR017877Myb-like domain
SMARTSM007172.2E-4553616IPR001005SANT/Myb domain
CDDcd122037.95E-28555621No hitNo description
Gene3DG3DSA:1.10.10.600.001555613IPR009057Homeodomain-like
PfamPF138371.5E-21556643No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 759 aa     Download sequence    Send to blast
MQSGYGGVSE FQQFIMDGGF AMAAAPPPPP TPQQQHAAAA AAAAGGQQEL GAPFRYQPLH  60
HHAMHPQQHH HHAPPQMPPH FAHFGGPTAA GGGIPFTQQL LHHQAAGQQH HHHHLQLFHE  120
QQHHHHQQQQ QHHKPQQPQP RWAPQQQQHH QHQQQHLGLD MEAAVPESTR AAAVPSGMPP  180
FLAAAMNFKL AVDQSGSGAT DDAMNDGGGG GSGMMLHGGG GGGAGRGEDE AATESRLRRW  240
TGEEEASIKE PAWRPLDIDF IHSTSSSSKR AAGKDKAPTP ESPSPAANAA ANYFKKGGDD  300
NVTANAAAAG GGNSSYKLFS ELEAIYKPGS GGAGQTTGSG SGLTGDDNAM ADLPHAPPPT  360
MCPDGDDDIL PHAPPPQPQA NASETSAGEE TETPAVVQPP QPPASMADGR RKRKRRRSQE  420
AATAASSFFE RLVQRLMEHQ ESLHAQFLSA MDRRERERAA RDEAWRRQES ESSARERAAR  480
ARDRASAAAR EAAIVSYLEK LSGHPIVLPP PAPSSPAPAA SEEIIIPQPE ASSAVGTELV  540
PYDAGVLRSS SASPSRWPKQ EVEALIRVRS GLERRFQEPG LKGPLWEEVS ARMAAAGYGG  600
RSAKRCKEKW ENINKYFRKA KESGKKRPAH AKTCPYFDEL NRLYSGRGGE AMDAAGDGGA  660
GKAASSELLD AVVKCPAGTA AGDQAAQYGP PPGFAPAGDG EDEGLRDMAV DGGEKYDDGE  720
DGEIGRSAGG RAMAMADQDQ DEGESHGGHH DEDDEEHH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1409414RRKRKR
2410415RKRKRR
3410416RKRKRRR
4411416KRKRRR
5412416RKRRR
6412417RKRRRS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00651PBMTransfer from LOC_Os02g01380Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi3g00697.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1200639e-98AK120063.1 Oryza sativa Japonica Group cDNA clone:J013001K22, full insert sequence.
GenBankAP0040499e-98AP004049.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1212_C06.
GenBankAP0067209e-98AP006720.1 Oryza sativa Japonica Group genomic DNA, chromosome 2, clone:OJA1212_C06.
GenBankAP0149589e-98AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126109e-98CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003570777.10.0trihelix transcription factor GTL1
TrEMBLI1HW350.0I1HW35_BRADI; Uncharacterized protein
STRINGBRADI3G00697.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63993547
Representative plantOGRP6631573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.22e-36Trihelix family protein