PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi2g59937.1.p

Common Name

BRADI_2g59937, LOC100832034

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

HB-other

Protein Properties

Length: 1168aa MW: 128083 Da PI: 7.3642

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi2g59937.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	20.8	6.7e-07	71	127	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +++R ++++ ++++++ F+ + ++ ++e +e+++ +g+t +qV+ +F +R++ +k Bradi2g59937.1.p 71 KKPRDLLNPKAVKIMQSIFALKDNIGKRETREISALCGVTVTQVREFFASQRTRVRK 127 799***************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	9.102	68	128	IPR001356	Homeobox domain
SMART	SM00389	2.1E-4	70	132	IPR001356	Homeobox domain
CDD	cd00086	3.32E-5	71	127	No hit	No description
SuperFamily	SSF46689	8.13E-7	71	130	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.2E-6	71	132	IPR009057	Homeodomain-like
Pfam	PF00046	1.9E-4	71	127	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009911	Biological Process	positive regulation of flower development
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1168 aa Download sequence Send to blast
MELVPFKPAA GALVEAVGGG SIPAMVAAQQ EQLHAQVGQL QRLVVAQCRL TGVNPLAQEM 60 AAGALSIKIG KKPRDLLNPK AVKIMQSIFA LKDNIGKRET REISALCGVT VTQVREFFAS 120 QRTRVRKVVR LSREKALKIE ALEALEALEA PNGVCSMSTE QTPVDIEAHA QLVEPLRTLE 180 PLVMSQSSSQ LVEVPQNSLQ QAEVQQSYAT ATTHSGTMQP TDAKINPDLA QKETKQEEVA 240 AGVESEDKKF LESIFARMRK EETFSGQVKL MEWILQINNV TILGWFLTMG GLPIVSTWLN 300 QAAMEEQTTV ILIIFKVLLH LPLHKALPAH MSALLQTMNR LRFYRTQDIS SRARNLLSRL 360 SKVLVRSQAS KKPQKDLICK QRISEILRDE SWRSEVDITD EILALTEGAS ESRKPEPRKT 420 PLLLTASADE PYKKSSVQTK SKERRKVLLV EHPNQKATGN NVHSVRSIST NSSRPLSADD 480 IQKAKMRAMF MQEKYGKRDT GKGTDKTEMA EIKKPSGLVN SDVLPMPRSP PVSTTKQPVD 540 PSPSTSKHNT VPLPDKPEIP VSPKPNITSR ENSREKLDSK RVLWQIPPEV WIDPSWTLSA 600 GENSKELDVQ TQRNRREKET FYASLNDIPL NPKDPWDLEM DFDDSLTPEI PTDQPSDADT 660 MEVDDVGTAP PSICFPDENN HVGSTSSSTV AAGANGAASE PDLELLAVLL KNPQLVFALS 720 SNQVGNLPTE QTVALLDMLK KTGLGLPELV NSLSNGTGVP KASEPGPETI PTSLPSPTPP 780 EDFPASASWR SEFPTQVRAP NLQQAHLPSR GNTSLVASTM HQSFSNVVSP LPSQPYTSIS 840 ALPAHIQTNI PSSPQLAVSV NTLNQHVAPV NDLLNGAAVH RHTQSYALAS DAAAGGIQQH 900 PAVNKPAHEF QNISNPALAP AWQSSAANLA STGRNTTPEP WASRTTNSFN DASMPYLNQS 960 AYSNQSTQSP YNSYASMSVS SQGLDRKGYT RTAEYQVSGR GTHQRHSLSP EPGAARVFGG 1020 AQAYVPEPLD VGNYGRQNYN PEPSRDWRSG QQSYAAAEPS SQWSSIQQSY PPAEPSRQWS 1080 SGQQSYVPAD PSSQWSSGQQ DYNQSDISRQ WSSALQTYAR AEPSRPSWNT ANQVQVPDTS 1140 RQWSLGNQDY YNPNDSRSSY DQRQRRR*

Sequence ? help Back to Top

Protein Sequence Length: 1168 aa Download sequence Send to blast

MELVPFKPAA GALVEAVGGG SIPAMVAAQQ EQLHAQVGQL QRLVVAQCRL TGVNPLAQEM  60
AAGALSIKIG KKPRDLLNPK AVKIMQSIFA LKDNIGKRET REISALCGVT VTQVREFFAS  120
QRTRVRKVVR LSREKALKIE ALEALEALEA PNGVCSMSTE QTPVDIEAHA QLVEPLRTLE  180
PLVMSQSSSQ LVEVPQNSLQ QAEVQQSYAT ATTHSGTMQP TDAKINPDLA QKETKQEEVA  240
AGVESEDKKF LESIFARMRK EETFSGQVKL MEWILQINNV TILGWFLTMG GLPIVSTWLN  300
QAAMEEQTTV ILIIFKVLLH LPLHKALPAH MSALLQTMNR LRFYRTQDIS SRARNLLSRL  360
SKVLVRSQAS KKPQKDLICK QRISEILRDE SWRSEVDITD EILALTEGAS ESRKPEPRKT  420
PLLLTASADE PYKKSSVQTK SKERRKVLLV EHPNQKATGN NVHSVRSIST NSSRPLSADD  480
IQKAKMRAMF MQEKYGKRDT GKGTDKTEMA EIKKPSGLVN SDVLPMPRSP PVSTTKQPVD  540
PSPSTSKHNT VPLPDKPEIP VSPKPNITSR ENSREKLDSK RVLWQIPPEV WIDPSWTLSA  600
GENSKELDVQ TQRNRREKET FYASLNDIPL NPKDPWDLEM DFDDSLTPEI PTDQPSDADT  660
MEVDDVGTAP PSICFPDENN HVGSTSSSTV AAGANGAASE PDLELLAVLL KNPQLVFALS  720
SNQVGNLPTE QTVALLDMLK KTGLGLPELV NSLSNGTGVP KASEPGPETI PTSLPSPTPP  780
EDFPASASWR SEFPTQVRAP NLQQAHLPSR GNTSLVASTM HQSFSNVVSP LPSQPYTSIS  840
ALPAHIQTNI PSSPQLAVSV NTLNQHVAPV NDLLNGAAVH RHTQSYALAS DAAAGGIQQH  900
PAVNKPAHEF QNISNPALAP AWQSSAANLA STGRNTTPEP WASRTTNSFN DASMPYLNQS  960
AYSNQSTQSP YNSYASMSVS SQGLDRKGYT RTAEYQVSGR GTHQRHSLSP EPGAARVFGG  1020
AQAYVPEPLD VGNYGRQNYN PEPSRDWRSG QQSYAAAEPS SQWSSIQQSY PPAEPSRQWS  1080
SGQQSYVPAD PSSQWSSGQQ DYNQSDISRQ WSSALQTYAR AEPSRPSWNT ANQVQVPDTS  1140
RQWSLGNQDY YNPNDSRSSY DQRQRRR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi2g59937.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010232788.1	0.0	homeobox protein LUMINIDEPENDENS
TrEMBL	A0A0Q3RDX0	0.0	A0A0Q3RDX0_BRADI; Uncharacterized protein
STRING	BRADI2G59937.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8043	30	34
Representative plant	OGRP4121	13	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	1e-147	HB-other family protein

Link Out ? help Back to Top
Phytozome	Bradi2g59937.1.p
Entrez Gene	100832034