PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g60817.1.p
Common NameBRADI_1g60817, LOC100825033
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family CAMTA
Protein Properties Length: 1021aa    MW: 114702 Da    PI: 6.1724
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g60817.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1172.27.3e-54211362117
              CG-1   2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptf 94 
                       l+ ++rwl+++ei+ iL n++ ++++ e+++ p sgsl+L++rk++ryfrkDG++w+kkkdgkt++E+hekLK g+++vl+cyYah+een++f
  Bradi1g60817.1.p  21 LDARSRWLRPTEICGILSNYKLFSIAPEPPNMPLSGSLFLFDRKILRYFRKDGHNWRKKKDGKTIKEAHEKLKAGSIDVLHCYYAHGEENENF 113
                       66799**************************************************************************************** PP

              CG-1  95 qrrcywlLeeelekivlvhylev 117
                       qrr+ywlLee++++ivlvhyle 
  Bradi1g60817.1.p 114 QRRTYWLLEEDFTHIVLVHYLEI 136
                       ********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143778.08716142IPR005559CG-1 DNA-binding domain
SMARTSM010765.1E-7219137IPR005559CG-1 DNA-binding domain
PfamPF038595.8E-4823135IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.103.5E-9435524IPR013783Immunoglobulin-like fold
CDDcd001020.00286436524No hitNo description
PfamPF018332.8E-7437520IPR002909IPT domain
SuperFamilySSF812967.78E-19437523IPR014756Immunoglobulin E-set
SuperFamilySSF484034.97E-16615730IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.204.3E-17626731IPR020683Ankyrin repeat-containing domain
CDDcd002044.37E-13630728No hitNo description
PROSITE profilePS5029717.635636730IPR020683Ankyrin repeat-containing domain
PfamPF127967.5E-7642731IPR020683Ankyrin repeat-containing domain
SMARTSM002480.49669701IPR002110Ankyrin repeat
PROSITE profilePS500889.164669701IPR002110Ankyrin repeat
SMARTSM00248360708737IPR002110Ankyrin repeat
SuperFamilySSF525403.45E-7839894IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000151.3843865IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.096844873IPR000048IQ motif, EF-hand binding site
PfamPF006120.075845864IPR000048IQ motif, EF-hand binding site
SMARTSM000150.05866888IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.231867891IPR000048IQ motif, EF-hand binding site
PfamPF006120.0015869888IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001077Molecular Functiontranscriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1021 aa     Download sequence    Send to blast
MAEARKFLMP NQPPDISQML LDARSRWLRP TEICGILSNY KLFSIAPEPP NMPLSGSLFL  60
FDRKILRYFR KDGHNWRKKK DGKTIKEAHE KLKAGSIDVL HCYYAHGEEN ENFQRRTYWL  120
LEEDFTHIVL VHYLEIQGGK QSYNRVKDET MQGLNADSPS CSNSITSQNQ VAAESPISGQ  180
MSEYEDAESD NFRASSRYYP LTEVQQPLDG VMMDKMLYSS ASTIGSSQGH HRELLPRTAN  240
LDNHSFARYD IDRLFDDDST GVRGISRTLF DTVPFEEPFG NYPAGFTEPT LHSSFATIEA  300
NSLEDNSCLE TFISEALYTN NLSQKEADAL SFAGMASSEM NNNRYTEGSI KHPLLRQSSL  360
DLFKLECTGL KKHDSFSRWM SKELPEVVDL DIKSNSDAFW SSIETVNVAD GSSMPTNEQL  420
DAYAVNPSLS QDQLFSILDV SPSCAYIDEK TKVSVTGTFL ANKEHMEDCK WSCMFGDVEV  480
PAEVLTDGTL RCYAPAHQSG RVPFYVTCSN RVACSEVREF EYRDSNYQYM ETSYSQTNGI  540
NEMHLHIRLE KLLSLRPDDH QVLVSSSGNE KHELINAINS LMLDEKWSDQ GSLADGKEVF  600
TARDQSSKKF VKDRLHYWLI CKVNDDGKGP NVLCKEGQGV IHLVAALGYD WAIRPIIVAG  660
VNVNFRDAHG WTALHWAASC GRERSVGILM ANGAASGALT DPSSEFPSGR TPADLASANG  720
HKGIAGFLAE SALTSHLSQL TIRESKDSGV QEVCGLPVAE DLTETNSSQL ALDDSHAESL  780
KGSLSAVRKS TQAAARIFQA FRVESFHRKK VVEYGDDDCG LSDEHTLSLV SLKNVKPGHH  840
DTHLHSAAVR IQNKFRGWKG KREFMIIRQR IVKLQAHVRG HQVRKSYRKV IWSVGIVEKV  900
ILRWRRKRRG LRAFQTEKQL EGPSQIQPAN AEDEYDFLQD GKRQAEARLQ RALARVHSMA  960
QYPEAREQYQ RLTTCVAEMQ QSRVMQDEML SEAAGADGSD FMTGLEDLIC RDDAQMPAIW  1020
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g60817.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010228547.10.0calmodulin-binding transcription activator 3 isoform X2
TrEMBLI1H4X20.0I1H4X2_BRADI; Uncharacterized protein
STRINGBRADI1G60817.20.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60838140
Representative plantOGRP5621565
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22300.20.0signal responsive 1