PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g39927.1.p
Common NameBRADI_1g39927, LOC100838245
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family M-type_MADS
Protein Properties Length: 177aa    MW: 19310.1 Da    PI: 9.8439
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g39927.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF61.21.2e-192269249
                      ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
            SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                      rienk  r vtfskR+ g+ KK +E+ vLC ++va++ fs+ gk++ +
  Bradi1g39927.1.p 22 RIENKESRLVTFSKRKSGLWKKGSEIAVLCHVRVALLAFSEAGKVFAF 69
                      9********************************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.5911373IPR002100Transcription factor, MADS-box
SMARTSM004321.2E-211372IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.35E-221482IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-181535IPR002100Transcription factor, MADS-box
PfamPF003194.2E-202269IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-183550IPR002100Transcription factor, MADS-box
PRINTSPR004043.7E-185071IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MVQPRAVGEK KTAGKRSIRI QRIENKESRL VTFSKRKSGL WKKGSEIAVL CHVRVALLAF  60
SEAGKVFAFG SPSVDAVLGD ATGVAPADDG AEWEAVEALY RETEGKIKEV AAESSQMDAV  120
GEKVRQAQAG AGKRFWFEVD VEALRAEELP VFAMALQRLR YNVGRRIESC LNSAAAK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g39927.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4693400.0KF469340.1 Brachypodium distachyon MADS-box transcription factor 46 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001288320.11e-124agamous-like MADS-box protein AGL62-like
RefseqXP_010233935.11e-124agamous-like MADS-box protein AGL62-like isoform X1
TrEMBLA0A2K2DNN11e-123A0A2K2DNN1_BRADI; Uncharacterized protein (Fragment)
STRINGBRADI1G39927.11e-123(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28333088
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65360.12e-20AGAMOUS-like 23
Publications ? help Back to Top
  1. Wei B, et al.
    Genome-wide analysis of the MADS-box gene family in Brachypodium distachyon.
    PLoS ONE, 2014. 9(1): p. e84781
    [PMID:24454749]