PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g24720.2.p
Common NameBRADI_1g24720, LOC100839461
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 996aa    MW: 109987 Da    PI: 8.322
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g24720.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3581.8e-18504603198
                       EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                       f+k l+ sd+++ grlvlpkk+ae++   ++++e+  l+++d sg++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  e
  Bradi1g24720.2.p 504 FEKMLSASDAGRIGRLVLPKKCAEAYfpPISQPEGLPLKVQDGSGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMHLQAGDIVTFSRID-PE 594
                       89**************************555566778***************9989999999***9.********************987.66 PP

                       E..EEEEE- CS
                B3  90 felvvkvfr 98 
                       ++l +++++
  Bradi1g24720.2.p 595 GKLIMGFRK 603
                       666666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-30499610IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-20501607IPR015300DNA-binding pseudobarrel domain
CDDcd100175.90E-24502603No hitNo description
SMARTSM010195.3E-22504604IPR003340B3 DNA binding domain
PROSITE profilePS5086311.209504605IPR003340B3 DNA binding domain
PfamPF023624.6E-16504603IPR003340B3 DNA binding domain
PROSITE profilePS5105014.265751801IPR011124Zinc finger, CW-type
PfamPF074962.4E-11756798IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 996 aa     Download sequence    Send to blast
MSSPAPPRPP PPSAPTPATA PTATPMSVQP PPPQPKPPPP QQPSGSSAPP PPQFHPPASH  60
QQPQPHPAAS HQQPQPHTPV SHQQPQQPHP AGSHQQQQQQ PHPPSSHQQR PRICFNTHCK  120
DPKSEGPRRR GWRLRSGDFA ELCDRCYGSF EQGSFCETFH SEVAGWRNCE ACGKRLHCGC  180
IVSIHAYALL DAGGVDCILC TRKSYAAAAM APNQMCPTPT MHMPQNVADK KDSFVKSWRP  240
PGGPYPSQWR QNSLWSVSGI QSDLQQRLAY EFDRPSGSEK LPPGRTFIHA QEKKFDDMHD  300
RPTTPAGMNQ IIRDRHADGH GQQTSMDPAH SYALYQREGP NPNSLHDHSH HGGESDSTSA  360
RKGIISEGCS SNIVSSSFKL DSRHPLESLL KENISLLPVG VGCTITNCPP VNGRNDIVRI  420
IPHQPTSQTP SSAASSAQKQ FYSHTVIDPE YQSHFRNGKP RMDAKARSQL LPRYWPRITD  480
KELQHLSAEY PKRTNSKSVI TPLFEKMLSA SDAGRIGRLV LPKKCAEAYF PPISQPEGLP  540
LKVQDGSGKE WVFQFRFWPN NNSRMYVLEG VTPCIQSMHL QAGDIVTFSR IDPEGKLIMG  600
FRKSTTQEQI LRQEQPTKPA NAAVTAPPEV NVNVARPHEV NTENKNISPV DQAAVGKVEN  660
GGVAQKEGPG TARSSPGSLK RKATSVGPKI KRFRMDNEES MELKITWEEA QELLRPPLKA  720
PSVVIVDGHE FEEYEEPPIL GRRTYFVTDQ SGENHQWAQC EDCSKWRKLP VGALLPSKWT  780
CSDNKWDPER TSCESAQEAT TEELAELFPI KAGAAKKPKA RIEPDSIDVS DGLDTLANLA  840
ILGEGESLPS QPTTKHPRHR PGCSCIVCIQ PPSGKGPKHK QTCTCNVCMT VRRRFKTLML  900
RREKRLSEKD TEEPRRKEVP QTGSDPPLGS TSPTSSPQKA DANPDDAEDM VVDHRMSSSP  960
VKNQIDLNIQ PEREDEQSPK SNAVGAARLP RDNPT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A7e-604766042124B3 domain-containing transcription repressor VAL1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g24720.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010236982.10.0B3 domain-containing protein Os07g0563300 isoform X1
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A0Q3GXM20.0A0A0Q3GXM2_BRADI; Uncharacterized protein
STRINGBRADI1G24720.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74903647
Representative plantOGRP12361446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-146HSI2-like 1