PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g21372.1.p
Common NameBRADI_1g21372, LOC100839763
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family CAMTA
Protein Properties Length: 1034aa    MW: 114985 Da    PI: 5.2882
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g21372.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1177.51.7e-55211362117
              CG-1   2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptf 94 
                       l+ ++rwl+++ei++iL n++k++++ e+++rp+sgsl+L++rk++ryfrkDG+ w+kkkdgktv+E+hekLKvg+v+vl+cyYah+een++f
  Bradi1g21372.1.p  21 LEAQNRWLRPTEICQILYNYKKFSIAPEPPNRPPSGSLFLFDRKILRYFRKDGHIWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGEENENF 113
                       5679***************************************************************************************** PP

              CG-1  95 qrrcywlLeeelekivlvhylev 117
                       qrr+ywlLee + +ivlvhyl+ 
  Bradi1g21372.1.p 114 QRRTYWLLEEGFMNIVLVHYLDI 136
                       ********************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143779.80816142IPR005559CG-1 DNA-binding domain
SMARTSM010768.6E-7719137IPR005559CG-1 DNA-binding domain
PfamPF038592.7E-5022135IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.107.2E-6449535IPR013783Immunoglobulin-like fold
SuperFamilySSF812961.03E-17450535IPR014756Immunoglobulin E-set
PfamPF018331.7E-6450523IPR002909IPT domain
CDDcd002044.48E-13613740No hitNo description
SuperFamilySSF484033.73E-16629742IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.206.8E-17637743IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029717.21648742IPR020683Ankyrin repeat-containing domain
PfamPF127962.4E-6654743IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500889.057681713IPR002110Ankyrin repeat
SMARTSM002480.67681713IPR002110Ankyrin repeat
SMARTSM00248290720749IPR002110Ankyrin repeat
SuperFamilySSF525403.72E-8852905IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000151.5854876IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.627856884IPR000048IQ motif, EF-hand binding site
PfamPF006120.0056856875IPR000048IQ motif, EF-hand binding site
SMARTSM000150.0041877899IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.651878902IPR000048IQ motif, EF-hand binding site
PfamPF006121.3E-4879899IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1034 aa     Download sequence    Send to blast
MAEMQKYGLS NPPPDIPEIL LEAQNRWLRP TEICQILYNY KKFSIAPEPP NRPPSGSLFL  60
FDRKILRYFR KDGHIWRKKK DGKTVKEAHE KLKVGSVDVL HCYYAHGEEN ENFQRRTYWL  120
LEEGFMNIVL VHYLDIKGGK QSFSRSKEAE EIARLSTDDS PACSNSFASQ SQVASQTMDA  180
ESPISGQISE YEDAETDNNR ASSRYHPFVE MQQPVDGVMM DNLLGSPAPS TCVNNLAAGY  240
QGELQAATTD LNNHYVTRHG IANVFNEAGA GLRSGSKSPL DSVHFREAFP EYSTGLMEPT  300
LHSSVATMGS NNLDDNSRLE TFMTEELYTN NLTQREADAL SAAGMTSSQV QSENYADGSI  360
GYPLLKQSSL DLFKIEPNGL KKFDSFTRWM SDELAEVADL GIKSSSDAFW SSTETVNAAD  420
GSSIPINEQL EQLNAYVVSP SLSQDQLFSI IDVSPSWAYS VSEIKVLITG TFLTNKENVE  480
NCKWSCMFGD VEVPAEVLAD GSLRCYTPVH QSGRVPFYVT CSNRVACSEV REFEFCDSET  540
QYMEADPHTT GINDMHLRIR LDKLLSLGPD DYEKYVLSDG NDKHELVSTI GALMLDDKFT  600
NLALPSDEKD FSAAQDKNLE KLVKDKLYCW LIHKIHDDGK GPNVLGKEGQ GVIHLVAALG  660
YDWAIRPIIT AGVPVNFRDA RGWTALHWAA SCGRERTVGS LITNGAASGA LTDPTPQFPS  720
GRTPADLASE NGHKGIAGFL AESALTSHLS ALTLKESQGC NVEKICELSE ANGFAEPSSA  780
QLTCQDSEAE SLKDSLSAVR KSTQAAARIF QAFRVESFHR KKVVEYGDDD CGLSDERTLS  840
LISLKNAKSG QNDMPHSAAV RIQNKFRGWK GRKEFMIIRQ KIIKIQAHVR GHQVRRNYRK  900
VVWSVGIVEK VILRWRRKGR GLRGFQPDKQ LEGPSQIEPA KDEDEYDFLK DGRKQAEGRL  960
QRSLARVKSM TNYPEAREQY SRLQACVTEL QDTKEKQDKM LIEAAGADGG DFMVDLEDLC  1020
GDDDGHTPMP TIL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g21372.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010235561.10.0calmodulin-binding transcription activator 3 isoform X3
TrEMBLA0A0Q3GW360.0A0A0Q3GW36_BRADI; Uncharacterized protein
STRINGBRADI1G21372.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60838140
Representative plantOGRP5621565
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22300.20.0signal responsive 1