PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g17680.1.p
Common NameBRADI_1g17680, LOC100828664
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 946aa    MW: 104193 Da    PI: 6.7344
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g17680.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.84.6e-19365464198
                       EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                       f+kvl+ sd+++ grlvlpk +ae++   ++++e++ lt++d++g++W +++++  +++s++yvl+ G     ++ +L++gD+v+F++++  +
  Bradi1g17680.1.p 365 FEKVLSASDAGRIGRLVLPKACAEAYfpPISQPEGRPLTIQDSKGKEWHFQFRFwpNNNSRMYVLE-GVTPCIQSLQLQAGDTVTFSRIE-PG 455
                       99**************************555567778***************9989999999***9.********************887.77 PP

                       E..EEEEE- CS
                B3  90 felvvkvfr 98 
                       ++lv+++++
  Bradi1g17680.1.p 456 GKLVMGFRK 464
                       777877776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-31357474IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.62E-21362465IPR015300DNA-binding pseudobarrel domain
CDDcd100173.54E-24363464No hitNo description
PfamPF023622.0E-16365464IPR003340B3 DNA binding domain
SMARTSM010192.1E-21365465IPR003340B3 DNA binding domain
PROSITE profilePS5086311.561365466IPR003340B3 DNA binding domain
PROSITE profilePS5105014.632626676IPR011124Zinc finger, CW-type
PfamPF074967.4E-11631673IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010030Biological Processpositive regulation of seed germination
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000034Biological Processregulation of seed maturation
GO:0005634Cellular Componentnucleus
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 946 aa     Download sequence    Send to blast
MAMAAVPAKR CMNTACGAAA PGVGGAAGEW RKGWPLRSGG FAVLCDKCGL AYEQLVFCDI  60
FHPQESGWRD CSFCGKRLHC GCAASKIFYG LLDSGGVQCM NCMQNSRPQP VSCQVAPKLF  120
LSPNNQRLFG KSDELLPGRP LESPPLMLDS RNDDIAIVAK SNHPFMVKNI EPGQSSNIFR  180
QKEIENGARQ IKWEQPTLSI GDMGRMPFLI KAQSTLESPQ SQCTPRDDIR DPTADSTTSE  240
SLSEACLSMS LAITNNGNKT EATSTMERPS LSPTTLFSDG RELATSLSPF QHAQRARHYL  300
TRPPRVAEGA AFDPMKDGFP HLRVARPPAE GRGRNQLLPR YWPRITDQEL QQISGDSNST  360
IVPLFEKVLS ASDAGRIGRL VLPKACAEAY FPPISQPEGR PLTIQDSKGK EWHFQFRFWP  420
NNNSRMYVLE GVTPCIQSLQ LQAGDTVTFS RIEPGGKLVM GFRKATNTVS LPDSQISAIA  480
NGSLLGDTFF SSPSENLSIV SGYSGFLQSM KGATDHHPSS LFDHHANSAD GDVSWLKTDR  540
FGGRSDEGSL QFLQRRSRNI GSKSRRLLMD AEDALELKLS WEEAQELLRP APSAKPTVVM  600
IEDYEFEEYD EPPVFAKRSI FTRRSTGEQD QWIQCDDCSK WRRLPLNVII ASKWTCPDNT  660
WDPKSCSCST PQELATKDLH SILQQYEDIR RRKSSYFLKQ NIPEMDASSF DALAAATVFG  720
EVGNQGASSV ATTTKHPRHR PGCTCIVCIQ PPSGKGPKHN PACTCNVCMT VRRRFKTLMM  780
RKKQRQSERE EAEASKKITW MSRDEPEGSS LSRSPQTLDP ARDGDVTMLD KVDMNKGHID  840
LNFHPASRDE VSMVGLLEVA SRPLESYMKQ NGLVSLAGEQ ASSSTQPPMV LPQAAPVGSE  900
EQTPDEARVM SVVEEREREP TDSMAIDEAA GENYGIAATD NAATA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yzy_C2e-663434671125B3 domain-containing transcription repressor VAL1
5yzz_C2e-663434671125B3 domain-containing transcription repressor VAL1
5z00_C2e-663434671125B3 domain-containing transcription repressor VAL1
5z00_G2e-663434671125B3 domain-containing transcription repressor VAL1
5z00_K2e-663434671125B3 domain-containing transcription repressor VAL1
5z00_M2e-663434671125B3 domain-containing transcription repressor VAL1
6j9a_A2e-663434672126B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1771782RRRFKTLMMRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g17680.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3586790.0AK358679.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1081G10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003562447.20.0B3 domain-containing protein Os07g0679700
SwissprotQ6Z3U30.0Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBLI1GR460.0I1GR46_BRADI; Uncharacterized protein
STRINGBRADI1G17680.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP65193748
Representative plantOGRP12361446
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.10.0high-level expression of sugar-inducible gene 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]