PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi1g01300.1.p

Common Name

BRADI_1g01300, LOC100822796

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

NF-YC

Protein Properties

Length: 309aa MW: 32066.8 Da PI: 10.9873

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi1g01300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	27.8	5.5e-09	213	292	19	98
NF-YC 19 helPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++P++r++ +++ ++ + + e+ l+ ka elf+ ++ + +a + +++++ +++++v + + ++fl d vp Bradi1g01300.1.p 213 CSFPMSRVRLLMRDEDASMRATNETVFLINKASELFLEAFAKDAHQNALKERKKSIAYDNLSTSVCNQKRYKFLSDFVPL 292 579****9998666666677889999***********************************************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	1.07E-13	199	292	IPR009072	Histone-fold
Pfam	PF00808	1.4E-8	214	276	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	6.4E-17	215	291	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
MAGKKRAAAT PAPPPSANCP DGAVASIPSA KRGRGRPKST APTAAKRGPG SAAPNSGAAS 60 ELAAPKPGKI GALKKKEPQE EGSKRKKQQA AGGAEKATTP AKMMKKKGGG EAEPGSRKKK 120 GKQESSGEAA EKPATAKKKK QASNGAEKAT SPGKRKRGDA EKPKSAKKAP AAAEKPTPTK 180 RKKKEDGEAE AKSGKKKGSP AKKAAAAAEP GSCSFPMSRV RLLMRDEDAS MRATNETVFL 240 INKASELFLE AFAKDAHQNA LKERKKSIAY DNLSTSVCNQ KRYKFLSDFV PLRVTAGDAL 300 KATAVDKP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	137	156	KKKQASNGAEKATSPGKRKR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi1g01300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010232191.1	0.0	histone H1.3
TrEMBL	I1GKR2	0.0	I1GKR2_BRADI; Uncharacterized protein
STRING	BRADI1G01300.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12826	19	22
Representative plant	OGRP8670	11	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07980.1	3e-22	nuclear factor Y, subunit C10

Link Out ? help Back to Top
Phytozome	Bradi1g01300.1.p
Entrez Gene	100822796