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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00119.48 | ||||||||
Common Name | AMTR_s00119p00069270 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | MYB_related | ||||||||
Protein Properties | Length: 213aa MW: 24117.1 Da PI: 5.1384 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 34.5 | 4.7e-11 | 2 | 36 | 12 | 48 |
HHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 12 lvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++++ + lG++ W++Ia +++ Rt++++k++w+++l evm_27.model.AmTr_v1.0_scaffold00119.48 2 IIRLQATLGNR-WAAIATYLP-QRTDNDIKNYWNTHL 36 5778899****.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.9E-16 | 1 | 37 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 0.0027 | 1 | 38 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.45E-7 | 1 | 36 | No hit | No description |
PROSITE profile | PS51294 | 19.748 | 1 | 40 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.52E-10 | 2 | 42 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 9.0E-10 | 2 | 36 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MIIRLQATLG NRWAAIATYL PQRTDNDIKN YWNTHLKKKI KKLQSGIETQ SNPVVLNSCQ 60 LIFRTNWEKK SQNLVNAQYP SHQSSTYASS TENISRLLEG WMRSSPKAQK IEATNEQKPL 120 IFNIRATDSG KHNRVNDENG KSDMISHEDL ESLLSFDSTV LYESPQATIS EELKDAMEIS 180 AQPPLSLLEK WLMDEATVQG EGELVEMSDE VF* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010258354.1 | 2e-48 | PREDICTED: myb-related protein 306 | ||||
TrEMBL | W1NNE8 | 1e-156 | W1NNE8_AMBTC; Uncharacterized protein | ||||
STRING | ERM97221 | 1e-156 | (Amborella trichopoda) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08810.1 | 4e-38 | myb domain protein 60 |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00119.48 |
Publications ? help Back to Top | |||
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