PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm_27.model.AmTr_v1.0_scaffold00069.140

Common Name

AMTR_s00069p00165540

Organism

Amborella trichopoda

Taxonomic ID

13333

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella

Family

MYB_related

Protein Properties

Length: 841aa MW: 93845.7 Da PI: 6.1296

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00069.140	genome	TAGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.6	2.8e-08	650	705	1	47
TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqky 47 +++WT+eE+e l ++v+++ W++I k+Rt+ ++k++w++ evm_27.model.AmTr_v1.0_scaffold00069.140 650 KLPWTAEEEEVLEEGVNKFAEVgakciPWRRILDFGRhtfdKTRTPVDLKDKWRNI 705 689**************855999****9988999************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57903	6.42E-11	313	369	IPR011011	Zinc finger, FYVE/PHD-type
Gene3D	G3DSA:3.30.40.10	3.8E-9	319	370	IPR013083	Zinc finger, RING/FYVE/PHD-type
PROSITE profile	PS50016	8.689	320	367	IPR019787	Zinc finger, PHD-finger
SMART	SM00249	7.7E-5	322	365	IPR001965	Zinc finger, PHD-type
PROSITE pattern	PS01359	0	323	364	IPR019786	Zinc finger, PHD-type, conserved site
PROSITE profile	PS50090	7.433	645	706	IPR017877	Myb-like domain
SuperFamily	SSF46689	5.68E-10	647	713	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.4E-8	648	708	IPR009057	Homeodomain-like
SMART	SM00717	1.3E-6	649	708	IPR001005	SANT/Myb domain
CDD	cd11660	1.91E-9	652	707	No hit	No description
Pfam	PF00183	1.5E-6	795	840	IPR001404	Heat shock protein Hsp90 family

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006457	Biological Process	protein folding
GO:0006950	Biological Process	response to stress
GO:0009751	Biological Process	response to salicylic acid
GO:0003677	Molecular Function	DNA binding
GO:0005524	Molecular Function	ATP binding
GO:0008270	Molecular Function	zinc ion binding
GO:0051082	Molecular Function	unfolded protein binding

Sequence ? help Back to Top
Protein Sequence Length: 841 aa Download sequence Send to blast
MASTLPWQWV LESLAEVQEV GTPILRALIS RIPDRNLGDT VREKVALKYL DEYLACISDC 60 SDSLGDSCAS NERAFHPSER CENVVLRICK ELGTLEKHGA ELLKRDLAQF IHEKRACLPK 120 SGLDRLKDTV LKGHHPASSS LQKRCGLVNE DHLHRSNVII GEALESRGEM GDEDHQDEPL 180 NLREQASSPC LKEAIDSDRV VNLSSSFAND FEAEIPEFSE HLGPTLINGG SKPETCKPHE 240 RIGPNHVNGN SDKFMEHKGT NPEQETHKAD EDLELNHANG DSEPVTHKTD EQMPLTCVHE 300 DFSYRNPVDL LSLGTDFSEQ RSCLKCSEGG DMLVCGDCSV PVHEKCLGTS VDINCEGIFY 360 CPHCSYRRAT SAYKEARENA KKAKEKVTHA RSALAAYMGN QKPPVGLSMK ETQASVEARI 420 GYSKKGYEGS LMALNHTSNE NLRVAADADS TEKSHEGSFI APKNRSNVEK LPCEGAERSH 480 SDDGRDVLPK NGEGDIVGVL NKNGDSSVVG VPRESDEMDV NECGVSFKKG EREADIVYVP 540 PQNGENDANV DGVSPKTIER DEDVIDSPPR DGERDDDCVP IPLGQQEPHV QPDKEPRPIK 600 KRKRKMSPKS HAENEDQEPQ SGGSGKRVLK QRSPPKRYTE RIFPYIRRNK LPWTAEEEEV 660 LEEGVNKFAE VGAKCIPWRR ILDFGRHTFD KTRTPVDLKD KWRNIMKRRG TIRLTTAKSN 720 EYFLTLERLL PWLLGLLMVS RQKKRNKHMS LLMVALCSLC RTHVGVTMKL YLQGVYHGRL 780 EVGCPWGFTE QGQVEKESGA DKNDQSVKDL VMLHFEIALL TSGFGLDDPN TVAGRIHMML 840 *

Sequence ? help Back to Top

Protein Sequence Length: 841 aa Download sequence Send to blast

MASTLPWQWV LESLAEVQEV GTPILRALIS RIPDRNLGDT VREKVALKYL DEYLACISDC  60
SDSLGDSCAS NERAFHPSER CENVVLRICK ELGTLEKHGA ELLKRDLAQF IHEKRACLPK  120
SGLDRLKDTV LKGHHPASSS LQKRCGLVNE DHLHRSNVII GEALESRGEM GDEDHQDEPL  180
NLREQASSPC LKEAIDSDRV VNLSSSFAND FEAEIPEFSE HLGPTLINGG SKPETCKPHE  240
RIGPNHVNGN SDKFMEHKGT NPEQETHKAD EDLELNHANG DSEPVTHKTD EQMPLTCVHE  300
DFSYRNPVDL LSLGTDFSEQ RSCLKCSEGG DMLVCGDCSV PVHEKCLGTS VDINCEGIFY  360
CPHCSYRRAT SAYKEARENA KKAKEKVTHA RSALAAYMGN QKPPVGLSMK ETQASVEARI  420
GYSKKGYEGS LMALNHTSNE NLRVAADADS TEKSHEGSFI APKNRSNVEK LPCEGAERSH  480
SDDGRDVLPK NGEGDIVGVL NKNGDSSVVG VPRESDEMDV NECGVSFKKG EREADIVYVP  540
PQNGENDANV DGVSPKTIER DEDVIDSPPR DGERDDDCVP IPLGQQEPHV QPDKEPRPIK  600
KRKRKMSPKS HAENEDQEPQ SGGSGKRVLK QRSPPKRYTE RIFPYIRRNK LPWTAEEEEV  660
LEEGVNKFAE VGAKCIPWRR ILDFGRHTFD KTRTPVDLKD KWRNIMKRRG TIRLTTAKSN  720
EYFLTLERLL PWLLGLLMVS RQKKRNKHMS LLMVALCSLC RTHVGVTMKL YLQGVYHGRL  780
EVGCPWGFTE QGQVEKESGA DKNDQSVKDL VMLHFEIALL TSGFGLDDPN TVAGRIHMML  840
*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	599	604	KKRKRK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020531473.1	0.0	uncharacterized protein LOC18447801 isoform X1
Refseq	XP_020531474.1	0.0	uncharacterized protein LOC18447801 isoform X1
TrEMBL	U5DDB1	0.0	U5DDB1_AMBTC; Uncharacterized protein
STRING	ERN19417	0.0	(Amborella trichopoda)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP1443	7	13

Link Out ? help Back to Top
Phytozome	evm_27.model.AmTr_v1.0_scaffold00069.140

Publications ? help Back to Top
Amborella Genome Project The Amborella genome and the evolution of flowering plants. Science, 2013. 342(6165): p. 1241089 [PMID:24357323]