PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00061.184
Common NameAMTR_s00061p00172870, LOC18447549
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family CO-like
Protein Properties Length: 413aa    MW: 45205.3 Da    PI: 4.8834
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00061.184genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.83.4e-06344439
                                  zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                                              + C+ +++++   +C+++  +lC +C  + H+       H++
  evm_27.model.AmTr_v1.0_scaffold00061.184  3 PLCDFCGDQRSMVYCRSDAACLCLSCDRKVHSAnalsrrHSR 44
                                              68*****************************65677777765 PP
2zf-B_box28.14.3e-094689441
                                  zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvp 41
                                               +C+++++++++  C d ++ lC++C  ++H g       H++++
  evm_27.model.AmTr_v1.0_scaffold00061.184 46 LVCDRCSSQPAIVRCLDESTSLCQNCDWNGH-GapgsasgHKRQT 89
                                              68*****************************.5588888898876 PP
3CCT65.61.4e-22353396144
                                       CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                                               R+ a+lRYkeK+ktRkFeKkirY+sRKa+A+ R+RvKGrFvk+ 
  evm_27.model.AmTr_v1.0_scaffold00061.184 353 RDSAVLRYKEKKKTRKFEKKIRYASRKARADIRKRVKGRFVKAG 396
                                               899**************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.414147IPR000315B-box-type zinc finger
SMARTSM003367.3E-10147IPR000315B-box-type zinc finger
CDDcd000211.96E-6347No hitNo description
PROSITE profilePS501199.1014390IPR000315B-box-type zinc finger
PfamPF006435.3E-64689IPR000315B-box-type zinc finger
CDDcd000217.11E-54790No hitNo description
SMARTSM003360.14890IPR000315B-box-type zinc finger
PfamPF062034.3E-17353395IPR010402CCT domain
PROSITE profilePS5101715.487353395IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MGPLCDFCGD QRSMVYCRSD AACLCLSCDR KVHSANALSR RHSRTLVCDR CSSQPAIVRC  60
LDESTSLCQN CDWNGHGAPG SASGHKRQTI NCYSGCPSAT ELSRIWTFVM DFPSTEDTTC  120
EQGMGLMTID ENNVSNSWGS MENGDKVDFC VGSSRIPALD SMSQVDQQVV TSDFTPPKMC  180
STEIKGLGIC DDDIYKDFNV DDVDLDFDDY EELFGGSHNP SGYLFDDAGV DSLFMGKNAS  240
VANSNAQSEN SMEASSVRPD GSNVLTPCIS RHVNTIQTTT CSEPIVSGHD RCTGLDLTFP  300
VRQACSSVSL SFSGMTGESN AGDYQDCGIS STLFMGEPPW DLSGPEGTFP QSRDSAVLRY  360
KEKKKTRKFE KKIRYASRKA RADIRKRVKG RFVKAGEAYD YDPLCQFQAR SF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006857708.10.0zinc finger protein CONSTANS-LIKE 9
RefseqXP_020531256.10.0zinc finger protein CONSTANS-LIKE 9
RefseqXP_020531257.10.0zinc finger protein CONSTANS-LIKE 9
SwissprotQ9SSE51e-125COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLU5DAE40.0U5DAE4_AMBTC; Uncharacterized protein
STRINGERN191750.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP13751334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07650.41e-113CONSTANS-like 9
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]