![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | evm_27.model.AmTr_v1.0_scaffold00057.98 | ||||||||
Common Name | AMTR_s00057p00120370 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 98aa MW: 11569.6 Da PI: 4.2949 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 34.3 | 5.5e-11 | 42 | 80 | 5 | 45 |
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++E++l+ ++ k+lG + W++Ia +++ Rt +q+ s+w+ evm_27.model.AmTr_v1.0_scaffold00057.98 42 SEDEEDLITRLYKLLGER-WDLIAGRLP-WRTKEQVESFWR 80 89****************.*********.***********7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 4.5E-7 | 37 | 85 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.72E-7 | 40 | 81 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.2E-10 | 41 | 80 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 9.6E-10 | 42 | 80 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 6.644 | 42 | 83 | IPR017877 | Myb-like domain |
CDD | cd00167 | 9.81E-6 | 42 | 80 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 98 aa Download sequence Send to blast |
MARNGEEPRC PQENETEEQR ENEIDPTATG RRWEVDLTSE ISEDEEDLIT RLYKLLGERW 60 DLIAGRLPWR TKEQVESFWR AKTGREHQEQ QPTCNPE* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006855366.2 | 1e-64 | MYB-like transcription factor ETC3 isoform X3 | ||||
TrEMBL | U5D8W4 | 2e-63 | U5D8W4_AMBTC; Uncharacterized protein | ||||
STRING | ERN16833 | 4e-64 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP3921 | 8 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G01380.1 | 3e-17 | MYB_related family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | evm_27.model.AmTr_v1.0_scaffold00057.98 |
Publications ? help Back to Top | |||
---|---|---|---|
|