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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00045.92 | ||||||||
Common Name | AMTR_s00045p00096080 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | MYB_related | ||||||||
Protein Properties | Length: 111aa MW: 12663.2 Da PI: 4.2134 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.6 | 2.5e-07 | 15 | 58 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 +WT eE +l+ a + + +W+ Ia+ +g +R+++++ ++ evm_27.model.AmTr_v1.0_scaffold00045.92 15 KWTREENKLFELALAVVDEEnpdRWSNIAAIVG-RRSAEEVEKHY 58 8**********999999988999**********.**********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.481 | 8 | 62 | IPR017877 | Myb-like domain |
SMART | SM00717 | 2.6E-5 | 12 | 64 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.0E-5 | 14 | 59 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.54E-11 | 14 | 69 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.9E-6 | 15 | 58 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.94E-6 | 15 | 58 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 111 aa Download sequence Send to blast |
MCSKIVNETE RPYSKWTREE NKLFELALAV VDEENPDRWS NIAAIVGRRS AEEVEKHYAF 60 LVEDIQRIES DKVPIPDYII PFSQDSVYAE VIFCHVDFSG LLGIGEEQQA * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 6e-21 | 16 | 78 | 11 | 73 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011621861.2 | 3e-70 | protein RADIALIS-like 3 | ||||
Swissprot | Q6NNN0 | 1e-21 | RADL3_ARATH; Protein RADIALIS-like 3 | ||||
TrEMBL | W1P267 | 3e-75 | W1P267_AMBTC; Uncharacterized protein | ||||
STRING | ERN02013 | 4e-76 | (Amborella trichopoda) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.2 | 5e-23 | RAD-like 6 |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00045.92 |
Publications ? help Back to Top | |||
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