PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00045.34
Common NameAMTR_s00045p00052450
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family CAMTA
Protein Properties Length: 1092aa    MW: 121837 Da    PI: 7.1649
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00045.34genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-11742.1e-54161322118
                                     CG-1   2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhe 71 
                                              l+ ++rwl+++e+++iL n++k+ lt +++ +p+ gsl+L++rk +ryfrkDG+ w+kkkdgktvrE+he
  evm_27.model.AmTr_v1.0_scaffold00045.34  16 LEAQNRWLRPSEVCEILRNYQKFYLTPDPPYKPPGGSLFLFDRKTLRYFRKDGHRWRKKKDGKTVREAHE 85 
                                              5679****************************************************************** PP

                                     CG-1  72 kLKvggvevlycyYahseenptfqrrcywlLeeelekivlvhylevk 118
                                              kLK g v+vl+cyYah+e+n+++qrrcyw+L+ +le+ivlvhy+evk
  evm_27.model.AmTr_v1.0_scaffold00045.34  86 KLKAGRVDVLHCYYAHGEDNENLQRRCYWMLDAKLEHIVLVHYREVK 132
                                              ********************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143780.3111137IPR005559CG-1 DNA-binding domain
SMARTSM010763.5E-7214132IPR005559CG-1 DNA-binding domain
PfamPF038594.9E-4917130IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.109.5E-8538627IPR013783Immunoglobulin-like fold
CDDcd001020.00835539627No hitNo description
PfamPF018331.6E-5540625IPR002909IPT domain
SuperFamilySSF812962.64E-18540626IPR014756Immunoglobulin E-set
SuperFamilySSF484032.64E-17731838IPR020683Ankyrin repeat-containing domain
CDDcd002043.58E-15732835No hitNo description
PROSITE profilePS5029718.086732847IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.203.4E-17737838IPR020683Ankyrin repeat-containing domain
SMARTSM002483400743772IPR002110Ankyrin repeat
PROSITE profilePS500889.698776808IPR002110Ankyrin repeat
SMARTSM002480.094776805IPR002110Ankyrin repeat
SMARTSM00248650815844IPR002110Ankyrin repeat
SMARTSM00015400897919IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500966.723898926IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525401.38E-69331004IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.15953975IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.059954983IPR000048IQ motif, EF-hand binding site
PfamPF006127.7E-4955974IPR000048IQ motif, EF-hand binding site
SMARTSM000150.003976998IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500969.6339771005IPR000048IQ motif, EF-hand binding site
PfamPF006121.1E-4980998IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500966.90610571085IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1092 aa     Download sequence    Send to blast
MCLKYPISCN ISQILLEAQN RWLRPSEVCE ILRNYQKFYL TPDPPYKPPG GSLFLFDRKT  60
LRYFRKDGHR WRKKKDGKTV REAHEKLKAG RVDVLHCYYA HGEDNENLQR RCYWMLDAKL  120
EHIVLVHYRE VKEGNRCGIP RLSTADNGIV AQSSSPACST QGNSAAVTTQ ISYASSPSTA  180
DWNGETRSPD FDDAAESGDD DDASASHPGF QFSSLQAFDG TNATESRSFL SDPQSRALPN  240
IMGLDRGSCD PYNVDLSFSG KYMPNELHHT NIGVSQEANS IPNICLSSRM GESLNLSLHK  300
GWSPHSHDAS ALWPEIDSSN KITSDAYEQK VTLSQTNDIE DSSVKLAAPV VGGNGPIKDG  360
RGEVYGMFPD VHLEALATGV KPISQEQANE GNIGPADGFL VDNQTTTAAR LVGQDSNKHH  420
PQQMPIRFQN DSEMGTFPHA GEQPLRMDTE ADGIRNNALV NNSFNDEEGP LKKLDSFGRW  480
MSKEIGGDCD DSLMASDSGN YWNTLDNQNG EKEVSSLSHH MQLDIDSMSP SLSQEQLFSI  540
IDFSPEWAYS DVETKVLISG TFLGDSKCLS SRKWSCMFGE VEVSAEVLTS GVIRCHAPPH  600
GPGRVPFYIT CSDRLACSEV REFEYRQRPS MFTLPPMMSS NSVDETNLQI RFAKLLYLGS  660
ERKWLDCSAE NCEKCGLRKH KFFLRSNDKT EWDNLVNSCK SFGRNHQNSR ELLVQKLLKD  720
RLSEWLLCKA HEDGKGPNVL DDEGQGAIHL AAALGYEWAM DPIVATGVNP NFRDLHGRTG  780
LHWAAYYGRE EAIVSLVSLG AAPGAVEDPT TKFPAGKTAA DLASSRGHKG IAGYLAEADL  840
TSHLSSLGLK ENAMDTISAT IAAEKAMETV EEQSIVPLDR GREDSLSLRG SLAAVRNAAQ  900
AAHRIQGAFR VYSFRHRQRQ QREINDVKFE VTEEVAALIS ANRAQKTGHF SDSLHSAALK  960
IQRKFRGWKG RKDFLIIRNR IVKIQAHVRG YQVRKQYRKV IWSVSIVEKA ILRWRRKGAG  1020
LRGFRAEAIK NVEPEAVKTD EYDFLRLGRK QKAAGVEKAL ARVQSMVRYP EARDQYMRLV  1080
TNFQNTKVIF F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4hb5_A2e-1171983517122Engineered Protein
4hb5_B2e-1171983517122Engineered Protein
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020520472.10.0calmodulin-binding transcription activator 3 isoform X1
TrEMBLW1P4S20.0W1P4S2_AMBTC; Uncharacterized protein
STRINGERN019550.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5621565
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.21e-176Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]