PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00044.44
Common NameAMTR_s00044p00072910, LOC18445408
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family MYB_related
Protein Properties Length: 547aa    MW: 59154.7 Da    PI: 7.1334
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00044.44genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.91.8e-1662106147
                                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                              r rWT+eE++++++a k++G   W++I +++g ++t+ q++s+ qk+
  evm_27.model.AmTr_v1.0_scaffold00044.44  62 RERWTEEEHKKFLEALKLYGRA-WRRIEEHVG-TKTAVQIRSHAQKF 106
                                              78******************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.97E-1756110IPR009057Homeodomain-like
PROSITE profilePS5129421.42757111IPR017930Myb domain
TIGRFAMsTIGR015576.7E-1760109IPR006447Myb domain, plants
SMARTSM007172.5E-1361109IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-962102IPR009057Homeodomain-like
PfamPF002496.7E-1462105IPR001005SANT/Myb domain
CDDcd001671.93E-1064107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009845Biological Processseed germination
GO:0009909Biological Processregulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
MSVQAKSIGA SATSASSSIP SYHVYSEISW ACTVKVPIGE MHLSGDEQAA KVRKPYTITK  60
QRERWTEEEH KKFLEALKLY GRAWRRIEEH VGTKTAVQIR SHAQKFFSKV ARDSNNGGCS  120
KAIEIPPPRP KRKPLHPYPR KSANRSKLDV IIPDKDGSIL PNLSGVGSSL MIPSLSEQGN  180
RSPSPNSSGT GSSLLISSLC EQGEGSPTSV LSAARLEMAS LDSNLEERSP SPASSASDSN  240
PVAFRELEYE NGGPIDSEPS GLEHDSASDA PRLLASGLSH QEKPAMKSES SLSNARNNPD  300
QGVLNSECNK NESPAETSTL SLKLFGRTVF VTGSHRPSHK TEENDSSQKI PFTAAEIPSE  360
NQIHTPSEGA SPSDVSDPSF NASWKGGLNT EMPNVIYSNA MPYWALYKAS PLPFINMASE  420
FKVQAKTVNC TASDTCIEGL DDKQRAQKEG SWTGSNTGSA NEMCGGDKNG DVVNSSEKHG  480
LFFYGELHSK ERVESGSGIC LKGGSNECLN TSQVSFRSCG KGFVPYRRQS WSEDDMREGK  540
RIRLCL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006855608.10.0uncharacterized protein LOC18445408 isoform X1
TrEMBLU5D4F00.0U5D4F0_AMBTC; Uncharacterized protein
STRINGERN170750.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP12551549
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17300.12e-37MYB_related family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]