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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00029.40 | ||||||||
Common Name | AMTR_s00029p00050350 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | MYB_related | ||||||||
Protein Properties | Length: 183aa MW: 20521 Da PI: 6.6744 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 31.4 | 4.4e-10 | 4 | 30 | 21 | 48 |
TT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 21 ggtWktIartmgkgRtlkqcksrwqkyl 48 ++ W++Ia +++ gRt++++k++w+++l evm_27.model.AmTr_v1.0_scaffold00029.40 4 KPIWSAIATHLP-GRTDNEIKNYWNTHL 30 568*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.76 | 1 | 34 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.34E-8 | 7 | 39 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.2E-13 | 7 | 31 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.92E-8 | 7 | 30 | No hit | No description |
Pfam | PF00249 | 1.9E-7 | 7 | 30 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 183 aa Download sequence Send to blast |
MIKKPIWSAI ATHLPGRTDN EIKNYWNTHL RKRLLRDGID PITHLPRFDI GTLLSLLHSN 60 SFSLCNPKPN LHFTSLNPQF PTATNNDIHI NNHSLTPPPS SDFNSQTTPD PQYTLDCSQT 120 MLHPSSMLLP DTHFSATINV PENPFPEMNN GNGRAIAEED SHYWSNLLKF ATEISSNLNS 180 QP* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011624626.2 | 1e-125 | myb-related protein 308-like | ||||
TrEMBL | W1PNM6 | 1e-129 | W1PNM6_AMBTC; Uncharacterized protein | ||||
STRING | ERN09409 | 1e-130 | (Amborella trichopoda) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G54230.1 | 2e-20 | myb domain protein 49 |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00029.40 |
Publications ? help Back to Top | |||
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