PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00025.251
Common NameAMTR_s00025p00198750
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family ARF
Protein Properties Length: 1182aa    MW: 130482 Da    PI: 6.3927
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00025.251genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.26.6e-23127228199
                                               EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE- CS
                                        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvlt 62 
                                               f+k+lt sd++++g +++p++ ae++       + ++++  +lt +d++  +W++++iyr++++r++lt
  evm_27.model.AmTr_v1.0_scaffold00025.251 127 FCKTLTASDTSTHGGFSVPRRAAEKIfppldftMTPPAQ--ELTARDLHDHTWTFRHIYRGQPKRHLLT 193
                                               99*****************************96555544..8*************************** PP

                                               TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                                        B3  63 kGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                                               +GW+ Fv++++L +gD+v+F   ++++++l+++++r+
  evm_27.model.AmTr_v1.0_scaffold00025.251 194 TGWSVFVSSKRLFAGDSVLFI--RDEKQQLLLGIRRA 228
                                               *********************..5688889****997 PP
2Auxin_resp118.64.9e-39253336183
                                Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsd 68 
                                               aahaa+++s+F+v+YnPras+seFv++++k++ka++ ++vs+GmRf+m+fete+s +rr++Gt++g+sd
  evm_27.model.AmTr_v1.0_scaffold00025.251 253 AAHAAANHSPFTVFYNPRASPSEFVIPLAKYNKAIYgTQVSLGMRFRMMFETEESGTRRYMGTITGISD 321
                                               79**********************************9******************************** PP

                                Auxin_resp  69 ldpvrWpnSkWrsLk 83 
                                               ld vrW+nS+Wr+L+
  evm_27.model.AmTr_v1.0_scaffold00025.251 322 LDAVRWKNSQWRNLQ 336
                                               *************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.62E-44115256IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-41120242IPR015300DNA-binding pseudobarrel domain
CDDcd100175.51E-20126218No hitNo description
PROSITE profilePS5086312.153127229IPR003340B3 DNA binding domain
SMARTSM010197.9E-24127229IPR003340B3 DNA binding domain
PfamPF023626.0E-21127228IPR003340B3 DNA binding domain
PfamPF065074.6E-34253336IPR010525Auxin response factor
PfamPF023099.4E-910471133IPR033389AUX/IAA domain
PROSITE profilePS5174527.1210481132IPR000270PB1 domain
SuperFamilySSF542772.75E-810501127No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010311Biological Processlateral root formation
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 1182 aa     Download sequence    Send to blast
MKSQANGVVN NPGDGERRSI NPELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKD  60
TDSHIPNYPN LPSKLICLLH NVTLHADAET DEVYAQMTLQ PVNTYDKEAL FASDLAMKPN  120
KPQTEFFCKT LTASDTSTHG GFSVPRRAAE KIFPPLDFTM TPPAQELTAR DLHDHTWTFR  180
HIYRGQPKRH LLTTGWSVFV SSKRLFAGDS VLFIRDEKQQ LLLGIRRANR QPTNISSSVL  240
SSDSMHIGIL AAAAHAAANH SPFTVFYNPR ASPSEFVIPL AKYNKAIYGT QVSLGMRFRM  300
MFETEESGTR RYMGTITGIS DLDAVRWKNS QWRNLQVGWD ESTAGERRNR VSIWEIEPVA  360
APFFIYPLPS SEPNVRDSQE CQVEIHDESD IESILKRTMP WLGDEICIKD PQAHSPPVIP  420
GLSLVQWMSM QQQQQQQNAL LSGPGVQPDY LRNPMATAQP ILQNYAASDL SRLQSQILQQ  480
QNNLPFNVPK LQQTQQLPDL KPPMSWPSNQ LAQTVVGEVN QHSQPQPLSQ SLPLPPQQQQ  540
QKQQNCVISN STFTQNQVQN PLLQSQNMGQ AQNPIQNQLL QSQSMASFCW PKAWFKALYS  600
SQGLFKTPHF NNNSSNSSSS SSSSSSSSNT ATAAAAAAAA ATQQQQQQQQ QQQQRPPPQQ  660
PQQSVVQNHQ QPNLQPSEHQ LQMQMLQNQQ PELQEQQRQQ LLLEAQQQLS QQLMQQSIPS  720
NQTQPHQQLH GVNTLLFHQQ HIPKSSPQTG IQFSPHSMQQ KLPQQQQVLL LENPASCLSA  780
STNHHSAPSN GLVANTRAAQ SGVTDEAPSC STSPSTNNCS VMTQPILSRN NRSGPKVEDI  840
VQSAATVISP GTLEAMGSNG ASTAKELTQQ KPDFQIKPSV SLPKTPSQAA LQTYLNAAQM  900
DYLDTSSSAT SICLSQTEGP TLQQNFPLSS FNPSQLMFRE DGEMQADPRN NVLFGVNIDS  960
PLNIPTTPDP LLVRSLVNGK VFQNQIPNGN ASTSYGTQGE IQQEVSTSMV SQSFGVPNLP  1020
FNGGMDPSMS DGSFMNRSSW PTQFPRMRTY TKVYKRGAVG RSIDITRYKG YEELRHDLAL  1080
MFGIEGQLED PLRTGWKLVY VDNEGDILLV GDDPWDEFVS YVQSIRILSP AEVQQMSLDG  1140
DLGNGVLQNQ ACSSSDGGNA WRGGQCDQNS ANPSAGSFEH S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1692035751388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ6Z2W30.0ARFE_ORYSJ; Auxin response factor 5
TrEMBLW1PR700.0W1PR70_AMBTC; Auxin response factor
STRINGERN125370.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP41931125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]