PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00024.203
Common NameAMTR_s00024p00216510, LOC18439394
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family MYB_related
Protein Properties Length: 651aa    MW: 71291.3 Da    PI: 9.2376
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00024.203genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.72.6e-08531579348
                                               SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
                           Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                                               +WT  E  +lv++v ++G g+W+ I r      + Rt  ++k++w+++l
  evm_27.model.AmTr_v1.0_scaffold00024.203 531 AWTLCEVMKLVEGVSRYGCGRWSEIKRLAFasyTYRTSVDLKDKWRNLL 579
                                               7**********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.445524583IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.3E-12526586IPR009057Homeodomain-like
SMARTSM007173.6E-6528581IPR001005SANT/Myb domain
SuperFamilySSF466898.58E-16530589IPR009057Homeodomain-like
CDDcd116606.35E-17530580No hitNo description
PfamPF002496.8E-6531579IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 651 aa     Download sequence    Send to blast
METLDTGAGK GDKHVEESRG GKSDTLTSQD IVNPVVYKLV RVKGDGTLIP ATDDEVMVVV  60
EDLLDDDKGG TSLAVGPDNN DDCTPTGDCT KGALEDTEGS SQSEGLDINK RKLSAKLEYI  120
EGMLQKVKEE ERLLLSCGTP DPSSKFILDT DAQLRDQNEQ LIVGDANFLS EYSSQVNSPP  180
LLPCLTDDQD SKIGSPNLCT KTMAENEGND SSSHNNNSLK PDFSTVKGEI CLDNLSIREL  240
HETFKATFGR ETSVKDKLWL KRRIAMGLTN SCNVSTTSFI IENKSLKKTN DVEAMEGVTP  300
SGRTIEGWGL GVGHMGRNFV SGKRLRKPKL EYEVKNDDHG PEQTASKRIR KPTKRYIEEL  360
SEVEARECSG KLVSSVRNSG HGQSSPKSRV RPAYDGGSVK ADIVARQDSL GGSGVLVPFV  420
SRVRRGRPRK NFMGFMKYNS SGMAAKLVKK ALGVRAARQD GEKAGKRWNS RSNSAPADHS  480
IGAKIRIEKG AIVPLVIEGD TEHSDLDPAD DESVVTVPTA KGGIRRKHHR AWTLCEVMKL  540
VEGVSRYGCG RWSEIKRLAF ASYTYRTSVD LKDKWRNLLR ASYAQGPTGR EARNTRKHTT  600
LPIPAPILLR VRELAATHSQ SAHDRSSSKP VGRSGRSVHK KREPDAYNCK *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1423429RRGRPRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006849623.10.0uncharacterized protein LOC18439394 isoform X1
RefseqXP_011625298.10.0uncharacterized protein LOC18439394 isoform X1
RefseqXP_020526080.10.0uncharacterized protein LOC18439394 isoform X1
RefseqXP_020526081.10.0uncharacterized protein LOC18439394 isoform X1
TrEMBLW1PTQ90.0W1PTQ9_AMBTC; Uncharacterized protein
STRINGERN112040.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP16451536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.21e-105TRF-like 6
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]