PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00024.162
Common NameAMTR_s00024p00192920
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family MYB_related
Protein Properties Length: 82aa    MW: 9509.51 Da    PI: 6.7782
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00024.162genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding284.9e-094677132
                                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS
                           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg 32
                                              rg W + Ed +l+++v ++G+ +W++Iar+  
  evm_27.model.AmTr_v1.0_scaffold00024.162 46 RGHWGPAEDAKLKELVDRFGPQNWNLIARKAS 77
                                              899**************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.944181IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-84575IPR009057Homeodomain-like
SuperFamilySSF466897.72E-74575IPR009057Homeodomain-like
PfamPF002492.1E-74676IPR001005SANT/Myb domain
CDDcd001673.28E-44975No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 82 aa     Download sequence    Send to blast
MEGSERKDGI EGNYRDERER HGEEEERMEN CGGKENEDRH CKLCARGHWG PAEDAKLKEL  60
VDRFGPQNWN LIARKASRKI R*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006829839.33e-30myb-like protein AA
TrEMBLW1PT174e-51W1PT17_AMBTC; Uncharacterized protein
STRINGERN111637e-52(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17800.12e-14myb domain protein 56
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]