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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00018.9 | ||||||||
Common Name | AMTR_s00018p00040300, LOC18436343 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | B3 | ||||||||
Protein Properties | Length: 224aa MW: 24552 Da PI: 9.6413 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 93.6 | 1.4e-29 | 17 | 106 | 1 | 85 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHH CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltled.esgrsWevkliyrkksgryvltkGWk 66 f+kv tpsdv+k++rlv+pk++ae+h + + ++ l++ed ++g+ W+++++y+++s++yv+tkGW+ evm_27.model.AmTr_v1.0_scaffold00018.9 17 FDKVVTPSDVGKLNRLVIPKQHAEKHfplgQAASDKGLLLSFEDnTTGKPWSFRYSYWNSSQSYVMTKGWS 87 89**************************99444557789*****8999*********************** PP HHHHHHT--TT-EEEEEE- CS B3 67 eFvkangLkegDfvvFkld 85 +Fvk+++L++gD+v F + evm_27.model.AmTr_v1.0_scaffold00018.9 88 RFVKDKHLDAGDVVSFLRG 106 ****************843 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.8E-38 | 12 | 123 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.75E-28 | 14 | 116 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.52E-26 | 15 | 103 | No hit | No description |
SMART | SM01019 | 1.2E-18 | 17 | 124 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.5E-26 | 17 | 106 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.254 | 17 | 123 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MDLEDESRLS LDREHMFDKV VTPSDVGKLN RLVIPKQHAE KHFPLGQAAS DKGLLLSFED 60 NTTGKPWSFR YSYWNSSQSY VMTKGWSRFV KDKHLDAGDV VSFLRGTGPH GRDRLYIACA 120 RRPPAAPPML PVVAAHAPPP VFWPSAAYVS PQMLYLRAGV QALEPVVRAQ ERKRVRLFGV 180 NLECPQAPEG ESGGGSDRTV LARWSAVAAA AEVVQGPRPV PGP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 4e-57 | 12 | 126 | 3 | 117 | B3 domain-containing transcription factor NGA1 |
5os9_B | 4e-57 | 12 | 126 | 3 | 117 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Regulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011624188.1 | 1e-164 | B3 domain-containing protein Os03g0120900 | ||||
Swissprot | O82799 | 6e-57 | NGA1_ARATH; B3 domain-containing transcription factor NGA1 | ||||
TrEMBL | W1PJC4 | 1e-162 | W1PJC4_AMBTC; Uncharacterized protein | ||||
STRING | ERN08103 | 1e-163 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP365 | 16 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46870.1 | 1e-54 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00018.9 |
Entrez Gene | 18436343 |