PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00012.208
Common NameAMTR_s00012p00239180, LOC18436159
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family MYB_related
Protein Properties Length: 592aa    MW: 65893.1 Da    PI: 9.517
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00012.208genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.31.8e-08503552147
                                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
                           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                                               r +++  E e lv+av+qlG+g+W+ + ++     k+Rt  ++k++w ++
  evm_27.model.AmTr_v1.0_scaffold00012.208 503 RRPFSVAEVEALVQAVEQLGTGRWRDVKHCAFdcaKHRTYVDLKDKWKTL 552
                                               6789999****************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542362.96E-6314397IPR029071Ubiquitin-related domain
PROSITE profilePS500538.546318388IPR000626Ubiquitin domain
CDDcd001966.71E-4322388No hitNo description
PROSITE profilePS5129414.8498557IPR017930Myb domain
SMARTSM007171.3E-7502555IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.1E-10503553IPR009057Homeodomain-like
CDDcd116601.66E-16504554No hitNo description
SuperFamilySSF466892.45E-15504584IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0005515Molecular Functionprotein binding
GO:0008301Molecular FunctionDNA binding, bending
GO:0042162Molecular Functiontelomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 592 aa     Download sequence    Send to blast
MVLEKSLDYG FKGYRVPIMP RASRSARGKA SVTKKIGGCQ KMFAFELLAS VASQILQKNE  60
DNVNPQEMAR MNRESNGDCL KATGWGSINI DGSLAIVSQG VGGLLGEHER SRLGSCNKSF  120
SDNCRNKLLR LDDSVGLETK CPALVSLDSS SERLSCGRAL HRSSSKHVKY VNRDDDEKFS  180
GCSQPSPLNA SSSRPLCFGV QRIEEMVVSK PWKFAPELLK KDEFPANDVK TKPFFRSNKA  240
CHIRRRASYH SYFKRRKLFK QSSVSKFKAI SICASTFPEK CRNGEDPAYP ANIHRASVGV  300
SSPASVLNSS WKTRESHVKL SVKSFKVPEL FIEMPETATV DSLKRAVMEA AMTVLGGGLR  360
VHVLLHGNKV PDDSKTLLQS GISQGDNMDT LGFMLEPNPI GDLTLKSDDP LFMLYPAANQ  420
PFTRYHANPS MDSIDGGDHS QTESCNGLKK NHDEDDTHLS HEVPAPESSK SLIVLPNMCT  480
EALNMFPLDQ RSQKTELTRR RIRRPFSVAE VEALVQAVEQ LGTGRWRDVK HCAFDCAKHR  540
TYVDLKDKWK TLVHTAQISP QQRRGEAVPQ ELLDRVLAVH SYWSPQKPKD K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A3e-504875891103Telomere binding protein TBP1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006846245.10.0telomere repeat-binding protein 2 isoform X1
RefseqXP_020524064.10.0telomere repeat-binding protein 2 isoform X1
RefseqXP_020524065.10.0telomere repeat-binding protein 2 isoform X1
TrEMBLW1PLA40.0W1PLA4_AMBTC; Uncharacterized protein
STRINGERN079200.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP13911225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.13e-68TRF-like 2
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]