PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00010.341
Common NameAMTR_s00010p00248200
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family MYB_related
Protein Properties Length: 647aa    MW: 72686.3 Da    PI: 5.9419
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00010.341genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.76.2e-09524565346
                                               SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                           Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                               rW++ + el+ ++ +q+G++ ++ I + ++ g+t+ q+k+++ k
  evm_27.model.AmTr_v1.0_scaffold00010.341 524 RWSKSDTELFFKGMRQFGTD-FAMIQKLFP-GKTRHQVKLKFKK 565
                                               9*******************.*********.**********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF159632.2E-27515598No hitNo description
PROSITE profilePS5129310.174520571IPR017884SANT domain
SMARTSM007171.0E-7521569IPR001005SANT/Myb domain
SuperFamilySSF466891.2E-9523570IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.4E-4523565IPR009057Homeodomain-like
CDDcd001675.40E-6524565No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 647 aa     Download sequence    Send to blast
MLKGKLPQIS RGQRFFFSRR IWVLICSRCK ATSLTLPIQV HETTSGPAHL KLEYLKNKVQ  60
KNDNIERSAN SLQWKGNRIQ VEVKKVGTKF QPKAKAKRPS IPSSHAQNKD NSNKPLIPEI  120
NPQPTVKPLN NTVEDGSIYD PNNGFSSLIK PCNDATKVSF THLLTSESPV DDRGVLDSSV  180
SNGTQEQELI SRRTEVSDEV GIREDGNAGE GPNETNLPKD SEMAKETELS DWHHTISKST  240
ENHDTGQEGL ISLREVQPQP SQIGEITQDF NNDSGNNEAS APVSCEKKRR VSTRKRNMTS  300
SVQEDAEEHA LMPPASHDVS GTGGSRRQLR KRSVVHKNKQ IEETADEDEE SNIETSQNDD  360
IIDDGGGGGD DDADDGDYLG GDEVKLRCSS RSKHSSSKNQ KSVNNAKVRP NKRKNSEEDN  420
LTEKAAKRKF SHSTRRKRRQ LDDDVLAMPE DEIDVSILTM RQLILLAEVK EKRTIKEAAQ  480
RKHDAADQSN AGLNGDKDGI DDMYVENLPI INYHSFMKRS PAERWSKSDT ELFFKGMRQF  540
GTDFAMIQKL FPGKTRHQVK LKFKKEEREH PMEVADALFN RSSDHTHYQM VMDRIKVEAA  600
AKEAEAAELN AENEDNEEID PKSEGSHEWN QAEDSFELHK EDVDGE*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011621882.10.0transcription factor TFIIIB component B'' isoform X2
TrEMBLW1NGR90.0W1NGR9_AMBTC; Uncharacterized protein
STRINGERM943650.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP8075913
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.15e-34MYB_related family protein
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]