PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00009.51
Common NameAMTR_s00009p00107000
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family MYB_related
Protein Properties Length: 732aa    MW: 80275.1 Da    PI: 7.2571
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00009.51genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.18.6e-08625674147
                                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
                          Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                                              r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
  evm_27.model.AmTr_v1.0_scaffold00009.51 625 RRPFSVVEVEALVQAVEKLGTGRWRDVKLHAFdhaKHRTYVDLKDKWKTL 674
                                              6789999***********************999**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542362.34E-7417509IPR029071Ubiquitin-related domain
CDDcd017696.56E-5426490No hitNo description
PROSITE profilePS5129414.778620679IPR017930Myb domain
SMARTSM007171.0E-7624677IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.3E-10625675IPR009057Homeodomain-like
CDDcd116604.06E-17626676No hitNo description
SuperFamilySSF466898.79E-15626706IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 732 aa     Download sequence    Send to blast
MMDYGLRGYW APTTPRALRS ARGKRVGLRK KVVEGCDEFG SFELLASVAG QILQEKEACQ  60
GLESKTSETH IGLESKDYFG TNNMEKHTNN VANATVKQEQ SSSEENFDIG PCCPRSYADI  120
HASKASRSTS TVTKSYSFRQ VPGGESATEL RVCSLSNFEK KSDTTSTEDN WDSKRSVVVG  180
SEDGYANLSD ESVFSAKNVA KKEMGFVESH EGKGENEIGE SMGQWKENYF KIEKMEDGLE  240
SKGGDSMDLE VKTPPIDFRA APLPATVGKA HICKDDDENS SRCNDPRTLP MKSFKASYRR  300
DRKHRKSVAS RFRKVVPQAS SNVHDCSVSG VHSETKDIAN DPQHYCSKGS NTRQKKSRLP  360
PSKMRRLFEG NAFCASGSDR KDVNREPSSA DGRLHDKSIP SPIDSSPAEG GKSSKRPGES  420
KVKLSIKSFT VPDLFVDMPE TATIGALKRA VMEAAIGMLG GGLRVRVLLH GKKVLEEGET  480
LLQAGISHGC EMDAVGFMLE PDQVSSRGSP EDPLFLLSCA ETQPLSLYPM TAASAPGERN  540
SDCLKGRSSS ASGNSVPSMT AEQTSMDPIK WEESDYDSVP SSAVGPDSGA LIVLPPVNMD  600
DVEGLALVPV NCKHRGSELV KRRIRRPFSV VEVEALVQAV EKLGTGRWRD VKLHAFDHAK  660
HRTYVDLKDK WKTLVHTAKI SPHQRRGEPV PQDLLDRVLS AHSYWSEQQN KQQQAEEGSN  720
CMLMRELAME A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A5e-536097121104Telomere binding protein TBP1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006827448.20.0telomere repeat-binding protein 5
RefseqXP_020527197.10.0telomere repeat-binding protein 5
RefseqXP_020527201.10.0telomere repeat-binding protein 5
TrEMBLW1NI310.0W1NI31_AMBTC; Uncharacterized protein
STRINGERM948640.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP13911225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.16e-76TRF-like 2
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]