PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00009.48
Common NameAMTR_s00009p00103030, LOC18422773
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family MYB_related
Protein Properties Length: 632aa    MW: 71136.8 Da    PI: 8.3904
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00009.48genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.62.8e-08508556348
                                              SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
                          Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                                              +WT  E  +lv++v+++G g W+ I r        Rt  ++k++w+++l
  evm_27.model.AmTr_v1.0_scaffold00009.48 508 SWTLHEVVKLVEGVQRHGVGKWSDIKRLEFassVYRTSVDLKDKWRNLL 556
                                              7************************9987789*99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.443501560IPR017930Myb domain
SuperFamilySSF466891.2E-15503578IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.2E-12503561IPR009057Homeodomain-like
SMARTSM007178.1E-8505558IPR001005SANT/Myb domain
CDDcd116601.45E-17507557No hitNo description
PfamPF002491.4E-5508556IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 632 aa     Download sequence    Send to blast
MATFEVGQSN VGFNSLDNAT KGVLSSESVN PLAYKLVRVE GDGSYIPASE DELMKFEPYS  60
EDPEDEKFLR NALFDMDAEN AERSLAIEDF PCSIDDSVLK NNGGALGCDI RQGLNQKIVD  120
FIDVLDEDGG EHVRVTSSIS PEFLLGKSSW DQSEVVNYSV DSFDSASGIL CPGSSFAEPA  180
TNLVFDPRKE CYFETATAAY PHQSTFSKSE RDTAKVSKLP GTIIPLPEAK YDQSSICLEN  240
LTIRELHEAF RTTFGRETSV KDKRWLKRHI SLGLHNFLVS ENASSFLDGK VSSNESDEVK  300
PYAFDNDSSE EICDSFAKVA CKRDSADGSG VSRKRQGRKD SVTTHLQGVA KEGFGVSHVE  360
ETERALVGRK RLRKPTRRYI EESSEMKSRF RSGRTVTSLK DTRDDFLRIR SREKRYWKGF  420
EGMTVVSRQD SLGGSGIQVP FVLRVRRGRP RKNCTSLLVH DAQDDKDRML LSVVQDKIYS  480
ETHYDASDDC VATIRTAKGG IRRKHHRSWT LHEVVKLVEG VQRHGVGKWS DIKRLEFASS  540
VYRTSVDLKD KWRNLLRASY AQLQTKKEVE NKRKHASSVS IPASILKRVR ELSVMYPKDH  600
QHRPLTEQVN NRNAFMMGRS GGNVHKRLQC N*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1445451RRGRPRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020526468.10.0uncharacterized protein LOC18422773 isoform X1
TrEMBLW1NHA90.0W1NHA9_AMBTC; Uncharacterized protein
STRINGERM948610.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP16451536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.16e-58TRF-like 6
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]