PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00009.297
Common NameAMTR_s00009p00257950
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family MYB_related
Protein Properties Length: 281aa    MW: 30565.6 Da    PI: 4.5
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00009.297genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.19.6e-096302348
                                              -HHHHHHHHTTTS-HHHHHHHHHHHT CS
                           Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqkyl 48
                                              +W++Ia+ ++ gRt++++k++w+++l
  evm_27.model.AmTr_v1.0_scaffold00009.297  6 RWSSIASQLP-GRTDNEIKNFWNTHL 30
                                              4*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.406134IPR017930Myb domain
CDDcd001674.44E-7530No hitNo description
PfamPF002499.5E-7630IPR001005SANT/Myb domain
SuperFamilySSF466891.79E-7635IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.1E-13631IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MKLIIRWSSI ASQLPGRTDN EIKNFWNTHL KKRLSLCGPL LESSTSPATS SPLMGPIPSM  60
TTSTRHMAQW ENARCDAEAR LSLQNQYQNQ NQNSLFQNHQ SRKAVSDHFL KIWYSGVGES  120
FRQFSGKYDD LSPATSSTKR PHGSDSCEFN VRVSDSVELN GQVPDSGEVD ASRFGSVEMS  180
GGCLDSSEVK GFQMDSGEMN GADLDSTEID GGGLDSGDFK AEDSASSSEL EVTGASFTAL  240
LGTEILLDFS QAMAESPNFG GFNSRSNPQM LPWNDIKSEF *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011625232.10.0myb-related protein 306
TrEMBLW1NIW00.0W1NIW0_AMBTC; Uncharacterized protein
STRINGERM951100.0(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.19e-27myb domain protein 17
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]