PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold00001.511
Common NameAMTR_s00001p00272270, LOC18424570
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family MYB_related
Protein Properties Length: 812aa    MW: 88097.2 Da    PI: 7.183
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold00001.511genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.13.1e-162468147
                                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                                              r rWT+eE++++++a k++G   W +I +++g ++t+ q++s+ qk+
  evm_27.model.AmTr_v1.0_scaffold00001.511 24 RERWTEEEHDRFLEALKLYGRA-WQRIEEHIG-TKTAVQIRSHAQKF 68
                                              78******************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.22E-171874IPR009057Homeodomain-like
PROSITE profilePS5129421.0371973IPR017930Myb domain
TIGRFAMsTIGR015573.9E-172271IPR006447Myb domain, plants
SMARTSM007175.9E-132371IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-82464IPR009057Homeodomain-like
PfamPF002492.3E-132467IPR001005SANT/Myb domain
CDDcd001672.03E-92669No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0042754Biological Processnegative regulation of circadian rhythm
GO:0043433Biological Processnegative regulation of sequence-specific DNA binding transcription factor activity
GO:0046686Biological Processresponse to cadmium ion
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 812 aa     Download sequence    Send to blast
METYSPGEDL VVKTRKPYTI TKQRERWTEE EHDRFLEALK LYGRAWQRIE EHIGTKTAVQ  60
IRSHAQKFFS KLEREAVIKG LPVGKAHDID IPPPRPKKKP SNPYPRKTGI GSVGPLTGGI  120
KDGSLLMKGP SACCSKAGLN SENSHIIQGS TETASSQRAK ETSIDNENLE VLTLSLGAPC  180
SSVSSASKIS PLVKSKTSTP TSPGAFKEFM PTKKDSGDQT QTDEGSATSK SKKTPKPDNQ  240
SELTELEIGR PDQLNLDYGS AVYVTSTHVP VRDNTDDLKH PRKLELPRKN DTQATQNYPR  300
HVPVHVVDGT LNKCMHSSSS NPTNSVSTVH QMGVHGNPRL IATPSLSVTS DSAASTMCPQ  360
FPMFHPSFTP FHLNPEAYKL LAPSAMNLSC VLSSYIIANL LQNPAAHAAA TLAASFWPGL  420
DFETPLDATT AEILRSSAPL NYVDVSPPNI AAVVAATVAA ASAWWASHGP LPLSHPHPHP  480
HHTCFFAPSA TLVPVAEPSP VSEEKKEEKN KESMDQDGPP FKQPQKAQAR DADFSPNLQA  540
RIPVSTMASS SDLEDSEGVG SDNSKPKVSE HEQKLLAVEV VNGKPRKQLD RSSCGSNASS  600
SSDIETDNLE KNDEGKEASP VAEFCYSGNE FGRRSRTAGA ISDSWKEVSE GGRLAFQALF  660
SREVLPQSFS PPHNQKDKTS NATHIDGEVK RKDMSKSSDS KEGNVDLNTA TWVEDHCTNE  720
DSSDTTRGNR PQTGSSVSEE EKGNGKTDTL NGKLQACRMG FEPYKRCSVE AKECRLVDGT  780
REKGLKRIRL EHESNSPTSV GSFLKRAHCP S*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00654PBMTransfer from LOC_Os08g06110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006829218.10.0protein LHY
RefseqXP_020532316.10.0protein LHY
TrEMBLW1NMV40.0W1NMV4_AMBTC; Uncharacterized protein
STRINGERM966340.0(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP9903510
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46830.13e-45circadian clock associated 1
Publications ? help Back to Top
  1. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]