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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT4G00540.2 | ||||||||
Common Name | ATMYB3R2, MYB3R2, MYB3R-2, PC-MYB2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | MYB | ||||||||
Protein Properties | Length: 405aa MW: 46264.8 Da PI: 9.073 | ||||||||
Description | myb domain protein 3r2 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54 | 3.8e-17 | 46 | 97 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT....TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg....kgRtlkqcksrwqkyl 48 +g WT+eEd++l ++vk++ g++Wk+Ia++++ ++R + qc++rw+k+l AT4G00540.2 46 KGGWTAEEDQILTNVVKKYQGRNWKRIAECLPgseeNRRNDVQCQHRWLKVL 97 688**********************************************986 PP | |||||||
2 | Myb_DNA-binding | 47.8 | 3.3e-15 | 103 | 152 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqkyl 48 +g+W +eEdell ++vk + + W++I+++++ gR +kqc++rw+++l AT4G00540.2 103 KGAWKKEEDELLSELVKDYMENdrpPWSKISKELP-GRIGKQCRERWHNHL 152 79******************99*************.*************97 PP | |||||||
3 | Myb_DNA-binding | 50.2 | 5.9e-16 | 158 | 200 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT eE+++lv+a + G++ W+ Ia+ ++ gRt++++k++w+ AT4G00540.2 158 KSPWTREEELILVQAQRGNGNK-WAEIAKLLP-GRTENNIKNHWN 200 679*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.888 | 41 | 97 | IPR017930 | Myb domain |
SMART | SM00717 | 1.4E-14 | 45 | 99 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.97E-16 | 47 | 120 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.1E-20 | 48 | 109 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.65E-11 | 49 | 97 | No hit | No description |
Pfam | PF13921 | 1.4E-17 | 49 | 114 | No hit | No description |
PROSITE profile | PS51294 | 27.387 | 98 | 156 | IPR017930 | Myb domain |
SMART | SM00717 | 4.9E-16 | 102 | 154 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.45E-12 | 105 | 152 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.9E-23 | 110 | 159 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.18E-27 | 132 | 209 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.085 | 157 | 207 | IPR017930 | Myb domain |
SMART | SM00717 | 2.1E-13 | 157 | 205 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.6E-14 | 158 | 200 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-19 | 160 | 207 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.93E-10 | 160 | 200 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006357 | Biological Process | regulation of transcription from RNA polymerase II promoter | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000981 | Molecular Function | RNA polymerase II transcription factor activity, sequence-specific DNA binding | ||||
GO:0001135 | Molecular Function | transcription factor activity, RNA polymerase II transcription factor recruiting | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 405 aa Download sequence Send to blast |
MTESIDLNRS ESESDNNTDD VTPIFAIDDS SKGYRRVSGP TRRSTKGGWT AEEDQILTNV 60 VKKYQGRNWK RIAECLPGSE ENRRNDVQCQ HRWLKVLDPS LQKGAWKKEE DELLSELVKD 120 YMENDRPPWS KISKELPGRI GKQCRERWHN HLNPTIIKSP WTREEELILV QAQRGNGNKW 180 AEIAKLLPGR TENNIKNHWN CSVKKRLEQF PSNLFSGVVY GSKPSSGFEY NFFNQRNTMV 240 ESCITSQIKE AAKSPQRDFL DLTLGLNWRS ISSSTSSLRG EESVSSSVDS VCARLNVSAC 300 LETPQNSNND TVCVKEVREM KERLRMAART FDTPSIISKT SSPASGLKRL RQKYDTPFPT 360 DARSHMSSEE DHSVSASPSS KYRFVKRNTC SGSKPLERRL DFDFL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 3e-52 | 49 | 207 | 9 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 3e-52 | 49 | 207 | 9 | 159 | MYB PROTO-ONCOGENE PROTEIN |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.3762 | 0.0 | seed |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | AT4G00540 | |||||
AtGenExpress | AT4G00540 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
TAIR | Encodes a putative c-myb-like transcription factor. Member of a class of domain proteins containing structural features of the vertebrate c-Myb proto-oncoprotein, including the presence of three Myb motifs (R1,R2,R3). | |||||
UniProt | Transcription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Required for proper circadian rhythm (PubMed:18426557). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:18426557}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT4G00540.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT4G00540 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF151647 | 0.0 | AF151647.1 Arabidopsis thaliana PC-MYB2 (PC-MYB2) mRNA, complete cds. | |||
GenBank | AF218054 | 0.0 | AF218054.2 Arabidopsis thaliana putative c-myb-like transcription factor (MYB3R2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_849276.2 | 0.0 | myb domain protein 3r2 | ||||
Swissprot | Q9SPN3 | 0.0 | MB3R2_ARATH; Transcription factor MYB3R-2 | ||||
TrEMBL | F4JHD4 | 0.0 | F4JHD4_ARATH; Myb domain protein 3r2 | ||||
STRING | AT4G00540.1 | 0.0 | (Arabidopsis thaliana) |
Link Out ? help Back to Top | |
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Phytozome | AT4G00540.2 |
Entrez Gene | 827977 |
iHOP | AT4G00540 |
wikigenes | AT4G00540 |