PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT33385
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family ARF
Protein Properties Length: 354aa    MW: 38781.7 Da    PI: 7.689
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT33385genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.61.6e-111231931999
               -HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
        B3  19 pkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
               p + a    g    +++l l d sg+sW++++++r+  ++  l++ W++ v+++g+k++D++vF    r  +++ +v ++r+
  EMT33385 123 PPHQA---AG---DKQDLLLHDISGNSWNMEHTHRGATRS--LSRDWQDLVHEKGVKVRDIIVFV---RcPDGRILVDLRRA 193
               33333...22...3357***************77777766..9**********************...55899999999986 PP
2Auxin_resp21.97.7e-09210291382
  Auxin_resp   3 haastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsd...ldpvrWpnSkWrsL 82 
                 + a ++ +F+v+Y+P  +   Fvv+++ v +a ++++ v + +++    +++ + +++G  +gv +   +  v      WrsL
    EMT33385 210 QLAIEGGAFTVTYYPGRGGESFVVPRAVVDAAAEREWEVDTPVRLLPK-DEVVHVQQQGSASGVIArgtIGAVVPGATTWRSL 291
                 56677889************************************9765.5555555566655554300033344455667776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.06E-1395193IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.9E-1297193IPR015300DNA-binding pseudobarrel domain
CDDcd100174.01E-997178No hitNo description
PROSITE profilePS508639.79897194IPR003340B3 DNA binding domain
SMARTSM010197.1E-598194IPR003340B3 DNA binding domain
PfamPF023622.5E-8129193IPR003340B3 DNA binding domain
PfamPF065075.9E-12208292IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MAAQFPVDGR WVSSVVALSR LPPPGTEAFY FARGHAEQWP HLPAAPEGHA HGVPCEVTAV  60
DYFTDGEEPC ARITLLPRPH NPPPAAIDIP APGRFVFYAK QIQQGDWQRS YFQVPKECER  120
LVPPHQAAGD KQDLLLHDIS GNSWNMEHTH RGATRSLSRD WQDLVHEKGV KVRDIIVFVR  180
CPDGRILVDL RRATPVNRDW GGQEVAQASQ LAIEGGAFTV TYYPGRGGES FVVPRAVVDA  240
AAEREWEVDT PVRLLPKDEV VHVQQQGSAS GVIARGTIGA VVPGATTWRS LQVDWDGSTS  300
STPAVNKWQV EPEGTRDAKR RRLSKTVPPV ASTAQRGVKL FGKTLVPEGS GSRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A3e-121131156388Auxin response factor 5
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1318322KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020191290.10.0auxin response factor 13-like
TrEMBLN1R5L10.0N1R5L1_AEGTA; Auxin response factor
STRINGEMT333850.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4962222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.18e-21auxin response factor 16