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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT33385 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | ARF | ||||||||
Protein Properties | Length: 354aa MW: 38781.7 Da PI: 7.689 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 35.6 | 1.6e-11 | 123 | 193 | 19 | 99 |
-HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS B3 19 pkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 p + a g +++l l d sg+sW++++++r+ ++ l++ W++ v+++g+k++D++vF r +++ +v ++r+ EMT33385 123 PPHQA---AG---DKQDLLLHDISGNSWNMEHTHRGATRS--LSRDWQDLVHEKGVKVRDIIVFV---RcPDGRILVDLRRA 193 33333...22...3357***************77777766..9**********************...55899999999986 PP | |||||||
2 | Auxin_resp | 21.9 | 7.7e-09 | 210 | 291 | 3 | 82 |
Auxin_resp 3 haastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsd...ldpvrWpnSkWrsL 82 + a ++ +F+v+Y+P + Fvv+++ v +a ++++ v + +++ +++ + +++G +gv + + v WrsL EMT33385 210 QLAIEGGAFTVTYYPGRGGESFVVPRAVVDAAAEREWEVDTPVRLLPK-DEVVHVQQQGSASGVIArgtIGAVVPGATTWRSL 291 56677889************************************9765.5555555566655554300033344455667776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 7.06E-13 | 95 | 193 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.9E-12 | 97 | 193 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.01E-9 | 97 | 178 | No hit | No description |
PROSITE profile | PS50863 | 9.798 | 97 | 194 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.1E-5 | 98 | 194 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.5E-8 | 129 | 193 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 5.9E-12 | 208 | 292 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 354 aa Download sequence Send to blast |
MAAQFPVDGR WVSSVVALSR LPPPGTEAFY FARGHAEQWP HLPAAPEGHA HGVPCEVTAV 60 DYFTDGEEPC ARITLLPRPH NPPPAAIDIP APGRFVFYAK QIQQGDWQRS YFQVPKECER 120 LVPPHQAAGD KQDLLLHDIS GNSWNMEHTH RGATRSLSRD WQDLVHEKGV KVRDIIVFVR 180 CPDGRILVDL RRATPVNRDW GGQEVAQASQ LAIEGGAFTV TYYPGRGGES FVVPRAVVDA 240 AAEREWEVDT PVRLLPKDEV VHVQQQGSAS GVIARGTIGA VVPGATTWRS LQVDWDGSTS 300 STPAVNKWQV EPEGTRDAKR RRLSKTVPPV ASTAQRGVKL FGKTLVPEGS GSRS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 3e-12 | 11 | 311 | 56 | 388 | Auxin response factor 5 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 318 | 322 | KRRRL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020191290.1 | 0.0 | auxin response factor 13-like | ||||
TrEMBL | N1R5L1 | 0.0 | N1R5L1_AEGTA; Auxin response factor | ||||
STRING | EMT33385 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP49622 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30080.1 | 8e-21 | auxin response factor 16 |