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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT32630 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | ARF | ||||||||
Protein Properties | Length: 858aa MW: 95371.6 Da PI: 6.0008 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.5 | 6.1e-24 | 67 | 168 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f+k+lt sd++++g +++p++ ae+ ++++++ +l+ +d++g++W++++i+r++++r++lt+GW+ F +a++L +gD+v+F ++++ +l++ EMT32630 67 FCKTLTASDTSTHGGFSVPRRAAEKVfppldftQQPPAQ--ELMAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFISAKRLVAGDSVLFI--WNDNNQLLL 163 99*****************************86555544..8************************************************..7777778** PP EEE-S CS B3 95 kvfrk 99 +++r+ EMT32630 164 GIRRA 168 *9997 PP | |||||||
2 | Auxin_resp | 120.8 | 1.1e-39 | 193 | 276 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaast+s F+++YnPras+seFv++++k++ka++ +++svGmRf+m fete+ss rr++Gt++g+sdldp rWpnS+Wrs+k EMT32630 193 AAHAASTNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDPARWPNSHWRSVK 276 79*********************************9789******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 5.49E-48 | 52 | 196 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.6E-42 | 59 | 182 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.05E-20 | 66 | 167 | No hit | No description |
SMART | SM01019 | 1.2E-24 | 67 | 169 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.8E-22 | 67 | 168 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.971 | 67 | 169 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.4E-34 | 193 | 276 | IPR010525 | Auxin response factor |
SuperFamily | SSF54277 | 2.94E-8 | 716 | 802 | No hit | No description |
Pfam | PF02309 | 4.6E-8 | 718 | 812 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 22.582 | 726 | 810 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 858 aa Download sequence Send to blast |
MESQIPNYPN LPAQLICQLH NVTMHADAET DEVYAQMTLQ PLSPQELKDP FLPAELGNAS 60 KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFTQ QPPAQELMAK DLHGNEWKFR 120 HIFRGQPKRH LLTTGWSVFI SAKRLVAGDS VLFIWNDNNQ LLLGIRRANR SQTVMPSSVL 180 SSDSMHIGLL AAAAHAASTN SRFTIFYNPR ASPSEFVIPL AKYVKAVYHT RISVGMRFRM 240 LFETEESSVR RYMGTITGIS DLDPARWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT 300 TYPMYSSPFP MRLKRPWPTG LPSLYGGKED DLTSSLMWLR DGANPGFQSF NFGGLGMSPW 360 MQPRMDSSLL GLQPDMYQAM SAAAFQNTTK QVSPTLLQFQ QPQNIAGRSA LLSSQILQQV 420 QPQFQEMHHQ NINDSAIQGH NQSEYLQQQL QRCQSFNGQK SPPPQQQESH HQHQQQQSQC 480 MQTPQHQQMQ EQKHSPDFQC VPNGLLVFSQ LSSTNQSPPS TLQTVSAFSQ QQNLQDRNIS 540 SLAPSNVPSM HDTLRPFPSE AGSNLQGVPR TTPVPVSDPW SSKRVAMESV IPSSSHVNSS 600 HMQQLDSEPS NIPQSSSLAP LPGRECLVDQ DGNSDNQNHL LFGVNIDSQS LLMQGGIPSL 660 QEDNGCIASL QDDNDSSTIP YSTCNFLSPS QNDFPLNEAL ASSGCLDESG YASFSENSDH 720 VNQPTAAFVK VYKSGAFGRL LDITKFSNYH ELRSEVGRLF GLEGQLEDPA RSGWQLVFVD 780 REDDILLVGD DPWQEFVNSV SCIKILTPQE VQQMGKQGID LLSSAPARRL GNSCDNYAGR 840 QESRSLSTVI ASVGSVEF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-138 | 3 | 302 | 94 | 393 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020199461.1 | 0.0 | auxin response factor 6-like | ||||
Swissprot | A2X1A1 | 0.0 | ARFF_ORYSI; Auxin response factor 6 | ||||
Swissprot | Q6H6V4 | 0.0 | ARFF_ORYSJ; Auxin response factor 6 | ||||
TrEMBL | A0A3B6QC96 | 0.0 | A0A3B6QC96_WHEAT; Auxin response factor | ||||
TrEMBL | A0A453NFF0 | 0.0 | A0A453NFF0_AEGTS; Auxin response factor | ||||
TrEMBL | M8C5M0 | 0.0 | M8C5M0_AEGTA; Auxin response factor | ||||
STRING | EMT32630 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2012 | 36 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30330.2 | 0.0 | auxin response factor 6 |
Publications ? help Back to Top | |||
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