PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT32630
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family ARF
Protein Properties Length: 858aa    MW: 95371.6 Da    PI: 6.0008
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT32630genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.56.1e-2467168199
               EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
               f+k+lt sd++++g +++p++ ae+        ++++++  +l+ +d++g++W++++i+r++++r++lt+GW+ F +a++L +gD+v+F   ++++ +l++
  EMT32630  67 FCKTLTASDTSTHGGFSVPRRAAEKVfppldftQQPPAQ--ELMAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFISAKRLVAGDSVLFI--WNDNNQLLL 163
               99*****************************86555544..8************************************************..7777778** PP

               EEE-S CS
        B3  95 kvfrk 99 
               +++r+
  EMT32630 164 GIRRA 168
               *9997 PP
2Auxin_resp120.81.1e-39193276183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aahaast+s F+++YnPras+seFv++++k++ka++ +++svGmRf+m fete+ss rr++Gt++g+sdldp rWpnS+Wrs+k
    EMT32630 193 AAHAASTNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDPARWPNSHWRSVK 276
                 79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.49E-4852196IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.6E-4259182IPR015300DNA-binding pseudobarrel domain
CDDcd100171.05E-2066167No hitNo description
SMARTSM010191.2E-2467169IPR003340B3 DNA binding domain
PfamPF023622.8E-2267168IPR003340B3 DNA binding domain
PROSITE profilePS5086312.97167169IPR003340B3 DNA binding domain
PfamPF065071.4E-34193276IPR010525Auxin response factor
SuperFamilySSF542772.94E-8716802No hitNo description
PfamPF023094.6E-8718812IPR033389AUX/IAA domain
PROSITE profilePS5174522.582726810IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 858 aa     Download sequence    Send to blast
MESQIPNYPN LPAQLICQLH NVTMHADAET DEVYAQMTLQ PLSPQELKDP FLPAELGNAS  60
KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFTQ QPPAQELMAK DLHGNEWKFR  120
HIFRGQPKRH LLTTGWSVFI SAKRLVAGDS VLFIWNDNNQ LLLGIRRANR SQTVMPSSVL  180
SSDSMHIGLL AAAAHAASTN SRFTIFYNPR ASPSEFVIPL AKYVKAVYHT RISVGMRFRM  240
LFETEESSVR RYMGTITGIS DLDPARWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT  300
TYPMYSSPFP MRLKRPWPTG LPSLYGGKED DLTSSLMWLR DGANPGFQSF NFGGLGMSPW  360
MQPRMDSSLL GLQPDMYQAM SAAAFQNTTK QVSPTLLQFQ QPQNIAGRSA LLSSQILQQV  420
QPQFQEMHHQ NINDSAIQGH NQSEYLQQQL QRCQSFNGQK SPPPQQQESH HQHQQQQSQC  480
MQTPQHQQMQ EQKHSPDFQC VPNGLLVFSQ LSSTNQSPPS TLQTVSAFSQ QQNLQDRNIS  540
SLAPSNVPSM HDTLRPFPSE AGSNLQGVPR TTPVPVSDPW SSKRVAMESV IPSSSHVNSS  600
HMQQLDSEPS NIPQSSSLAP LPGRECLVDQ DGNSDNQNHL LFGVNIDSQS LLMQGGIPSL  660
QEDNGCIASL QDDNDSSTIP YSTCNFLSPS QNDFPLNEAL ASSGCLDESG YASFSENSDH  720
VNQPTAAFVK VYKSGAFGRL LDITKFSNYH ELRSEVGRLF GLEGQLEDPA RSGWQLVFVD  780
REDDILLVGD DPWQEFVNSV SCIKILTPQE VQQMGKQGID LLSSAPARRL GNSCDNYAGR  840
QESRSLSTVI ASVGSVEF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-138330294393Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020199461.10.0auxin response factor 6-like
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A3B6QC960.0A0A3B6QC96_WHEAT; Auxin response factor
TrEMBLA0A453NFF00.0A0A453NFF0_AEGTS; Auxin response factor
TrEMBLM8C5M00.0M8C5M0_AEGTA; Auxin response factor
STRINGEMT326300.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20123685
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.20.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]