PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT31591
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family ARF
Protein Properties Length: 700aa    MW: 77337.2 Da    PI: 6.5213
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT31591genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B369.64.1e-22119219198
               EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
               f+k+ltpsd++++g +++ +++a+e+       ++ + +++++ +d++g +W++k+iyr++++r++lt+GW+ Fv +++L +gD +v    +++++e +v+
  EMT31591 119 FCKILTPSDTSTHGGFSVLRRHANEClppldmAMP-TPTQEIISKDLHGSEWRFKHIYRGQPRRHLLTTGWSTFVTSKKLMAGDAFVYL--RSETGEQRVG 216
               99****************************97444.44569*********************************************999..4477778999 PP

               EE- CS
        B3  96 vfr 98 
               v+r
  EMT31591 217 VRR 219
               997 PP
2Auxin_resp97.42.1e-32245326183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 a+ha++t+s+F v+Y+Pr s+s+++v+v+k+++a k+ ++vGmRf+m+fe ed++ +++ Gt+vg  dl+p +W++S+W+sLk
    EMT31591 245 ASHALKTNSIFVVYYRPRLSQSQYIVSVNKYLQASKTGFTVGMRFRMNFEAEDVPVKKFFGTIVGDGDLSP-QWSGSEWKSLK 326
                 789********************************************************************.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.09E-36107248IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.9E-35112234IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.279119221IPR003340B3 DNA binding domain
SMARTSM010198.7E-18119221IPR003340B3 DNA binding domain
CDDcd100174.77E-17119219No hitNo description
PfamPF023623.8E-20119219IPR003340B3 DNA binding domain
PfamPF065076.4E-28245326IPR010525Auxin response factor
PfamPF023092.3E-7580633IPR033389AUX/IAA domain
SuperFamilySSF542771.81E-9593669No hitNo description
PROSITE profilePS5174523.355596676IPR000270PB1 domain
Gene3DG3DSA:3.10.20.2405.6E-4597657No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 700 aa     Download sequence    Send to blast
MAQPGRGRDP ELFAELFVKY STWSNFDPKY AKQKKYFLQG HLEQLQEPTD SALLAEQIKM  60
FQVPYKILCK VVNVELKAEA ETDEVYAQIT LQPESDQDNL PLICDPILPE TPRPVVHTFC  120
KILTPSDTST HGGFSVLRRH ANECLPPLDM AMPTPTQEII SKDLHGSEWR FKHIYRGQPR  180
RHLLTTGWST FVTSKKLMAG DAFVYLRSET GEQRVGVRRL VQKQSTMPAS VISSQSMHLG  240
VLASASHALK TNSIFVVYYR PRLSQSQYIV SVNKYLQASK TGFTVGMRFR MNFEAEDVPV  300
KKFFGTIVGD GDLSPQWSGS EWKSLKVQWD DSVAICNGPE RVSPWEIDSS DGSSPAISAL  360
LQSSAKNKRP RETNENFDLP SQEPTQEFWL SGMTQQHERT YVGSSDPNRI SGYHQILWPS  420
SEPAGYGAMS SSSVCQTPLG LGDGWPKDFN PSSQGISPTL SEITQKLNRV ASSEGRTPPP  480
WATALCGGYR AEEPTSKLSC NTTLPLPEQV APYLPKVAEK AKEPGVVRLF GVNLMENTNN  540
AAAPTAGNAS AGAGETSARV AGSVEGSGQL SAFSKVTKVA NESPREIQSQ QNNAGRNRVK  600
VQMHGNAVGR AVDLASLDGY EGLTSELEQM FEIKDIKQNF KVAFTDNEGD TMKVGDDPWM  660
EFCRMVRKIV IYPIEDDKNM DPRQTSVLAA APDPDPKANL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1302834835353Auxin response factor 1
4ldw_A1e-1302834835353Auxin response factor 1
4ldw_B1e-1302834835353Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin under light or dark conditions. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3752620.0AK375262.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3089G20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020181787.10.0auxin response factor 1-like
SwissprotQ5NB850.0ARFA_ORYSJ; Auxin response factor 1
TrEMBLM8D5F10.0M8D5F1_AEGTA; Auxin response factor
STRINGEMT315910.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108236116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46530.11e-150auxin response factor 11
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]