PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT31207
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family M-type_MADS
Protein Properties Length: 197aa    MW: 21577.7 Da    PI: 9.6078
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT31207genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF43.34.8e-142263243
              ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
    SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
               ie+  +rqv fskRr +++  A  LS LC++ vav++fs +
  EMT31207 22 LIEDPAKRQVAFSKRRPTLFGMAGDLSALCGVHVAVVVFSRS 63
              699************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.2E-141274IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.3011373IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-91535IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.31E-181590IPR002100Transcription factor, MADS-box
PfamPF003199.4E-172371IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-93550IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-95071IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MAMKMKTKKG GTGRKKRDEM KLIEDPAKRQ VAFSKRRPTL FGMAGDLSAL CGVHVAVVVF  60
SRSARGNAYA FGSPSVAAVL RRYHQDGGHD EDDDSTALAV HGDDDAGALA ALRRELDDTR  120
TRVEAEKKRM KAVEANVERA MAARSTALWW QADVEALGAA ELPEFETALW RLRDTLLRRV  180
DALQLPLAAA PPACMNM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1315KMKTKKGGTGRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020189271.11e-139agamous-like MADS-box protein AGL61
TrEMBLM8CUB51e-140M8CUB5_AEGTA; Agamous-like MADS-box protein AGL61
STRINGEMT312071e-140(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28333088
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-18AGAMOUS-like 61