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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT27061 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | ARF | ||||||||
Protein Properties | Length: 637aa MW: 70840 Da PI: 6.1721 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 57.3 | 2.8e-18 | 101 | 174 | 23 | 99 |
.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 23 aeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 a++++++++++ +l+ +d++g W +++i+r++++r++lt+GW+ Fv++++L +gD ++F + +++el+v+v+r+ EMT27061 101 ANDMSQNPPCQ-ELVAKDLHGTDWHFRHIFRGQPRRHLLTTGWSVFVSSKRLVAGDAFIFL--RGENGELRVGVRRH 174 44555666675.9************************************************..449999******96 PP | |||||||
2 | Auxin_resp | 98.7 | 7.9e-33 | 199 | 284 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsd...ldpvrWpnSkWrsLk 83 a+ha+st++ F+v+Y+Pr+s+seFvv+v+k+++a k+++svGmRfkm+fe++++ err+sGt++g+ ++++ W +S W+sLk EMT27061 199 ASHAISTGTLFSVFYKPRTSQSEFVVSVNKYLEAKKQNISVGMRFKMKFEGDEALERRFSGTIIGIGStptVSTSLWADSDWKSLK 284 789**************************************************************98622256678********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 2.3E-6 | 92 | 175 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 7.85E-27 | 99 | 202 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.2E-15 | 103 | 174 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 8.8E-27 | 103 | 188 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.50E-14 | 107 | 173 | No hit | No description |
PROSITE profile | PS50863 | 10.884 | 112 | 175 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.5E-31 | 199 | 284 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 9.3E-6 | 482 | 557 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 17.461 | 489 | 576 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 2.62E-7 | 492 | 557 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006306 | Biological Process | DNA methylation | ||||
GO:0006346 | Biological Process | methylation-dependent chromatin silencing | ||||
GO:0007267 | Biological Process | cell-cell signaling | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0010267 | Biological Process | production of ta-siRNAs involved in RNA interference | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 637 aa Download sequence Send to blast |
MAMANPSAAG APGICSDALF RELWHACAGP LITVPRQGER VYYFPQGHME QLEASTNQQL 60 DQYLPMFNLP SKILCSVVNV ELRTEADSDE VYAQIMLQPE ANDMSQNPPC QELVAKDLHG 120 TDWHFRHIFR GQPRRHLLTT GWSVFVSSKR LVAGDAFIFL RGENGELRVG VRRHMRQVNN 180 MPSSVISSHS MHLGVLATAS HAISTGTLFS VFYKPRTSQS EFVVSVNKYL EAKKQNISVG 240 MRFKMKFEGD EALERRFSGT IIGIGSTPTV STSLWADSDW KSLKVQWDEP SSILRPDRVS 300 PWELEPLDAA NPQPPQPPLR NKRPRLPASP SVSIILEFYI SKLVLFVSGL WKSPAEPSQT 360 LSFSEPQQAR GLFTNSRFSS SSNVAFNQFY WPARESREDS YAGSTNKVTV ERKLEPAAGG 420 CRLFGIEIRS AVDETQPVLT VSGDGYDQTA ASVDVDSGEL SQPSNINNSG AQAASSERAL 480 LETQSRQVRS CTKVIMTGMA VGRAVDLTKL YGYVDLHCKL EEMFDIQGEL CSTLKKWQVV 540 YADEEDDMML VGDDPWDKEA FWHFVTFSRQ LFYARTGEIG HLCLSFPEVQ CELLSTDSAA 600 AKQNLNHRAN PAESGSRNPL PKSEPKAEAA QDVLSKI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-164 | 1 | 309 | 1 | 357 | Auxin response factor 1 |
4ldw_A | 1e-164 | 1 | 309 | 1 | 357 | Auxin response factor 1 |
4ldw_B | 1e-164 | 1 | 309 | 1 | 357 | Auxin response factor 1 |
4ldx_A | 1e-164 | 1 | 309 | 1 | 357 | Auxin response factor 1 |
4ldx_B | 1e-164 | 1 | 309 | 1 | 357 | Auxin response factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00097 | PBM | Transfer from AT1G59750 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK251666 | 0.0 | AK251666.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf119n03, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020162394.1 | 0.0 | auxin response factor 9 | ||||
Swissprot | Q0JCZ4 | 0.0 | ARFI_ORYSJ; Auxin response factor 9 | ||||
TrEMBL | M8CTG9 | 0.0 | M8CTG9_AEGTA; Auxin response factor | ||||
STRING | EMT27061 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1082 | 36 | 116 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G59750.3 | 0.0 | auxin response factor 1 |
Publications ? help Back to Top | |||
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