PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT27061
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family ARF
Protein Properties Length: 637aa    MW: 70840 Da    PI: 6.1721
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT27061genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.32.8e-181011742399
               .HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
        B3  23 aeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
               a++++++++++ +l+ +d++g  W +++i+r++++r++lt+GW+ Fv++++L +gD ++F   + +++el+v+v+r+
  EMT27061 101 ANDMSQNPPCQ-ELVAKDLHGTDWHFRHIFRGQPRRHLLTTGWSVFVSSKRLVAGDAFIFL--RGENGELRVGVRRH 174
               44555666675.9************************************************..449999******96 PP
2Auxin_resp98.77.9e-33199284183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsd...ldpvrWpnSkWrsLk 83 
                 a+ha+st++ F+v+Y+Pr+s+seFvv+v+k+++a k+++svGmRfkm+fe++++ err+sGt++g+     ++++ W +S W+sLk
    EMT27061 199 ASHAISTGTLFSVFYKPRTSQSEFVVSVNKYLEAKKQNISVGMRFKMKFEGDEALERRFSGTIIGIGStptVSTSLWADSDWKSLK 284
                 789**************************************************************98622256678********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010192.3E-692175IPR003340B3 DNA binding domain
SuperFamilySSF1019367.85E-2799202IPR015300DNA-binding pseudobarrel domain
PfamPF023621.2E-15103174IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.8E-27103188IPR015300DNA-binding pseudobarrel domain
CDDcd100177.50E-14107173No hitNo description
PROSITE profilePS5086310.884112175IPR003340B3 DNA binding domain
PfamPF065072.5E-31199284IPR010525Auxin response factor
PfamPF023099.3E-6482557IPR033389AUX/IAA domain
PROSITE profilePS5174517.461489576IPR000270PB1 domain
SuperFamilySSF542772.62E-7492557No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006306Biological ProcessDNA methylation
GO:0006346Biological Processmethylation-dependent chromatin silencing
GO:0007267Biological Processcell-cell signaling
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0010267Biological Processproduction of ta-siRNAs involved in RNA interference
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 637 aa     Download sequence    Send to blast
MAMANPSAAG APGICSDALF RELWHACAGP LITVPRQGER VYYFPQGHME QLEASTNQQL  60
DQYLPMFNLP SKILCSVVNV ELRTEADSDE VYAQIMLQPE ANDMSQNPPC QELVAKDLHG  120
TDWHFRHIFR GQPRRHLLTT GWSVFVSSKR LVAGDAFIFL RGENGELRVG VRRHMRQVNN  180
MPSSVISSHS MHLGVLATAS HAISTGTLFS VFYKPRTSQS EFVVSVNKYL EAKKQNISVG  240
MRFKMKFEGD EALERRFSGT IIGIGSTPTV STSLWADSDW KSLKVQWDEP SSILRPDRVS  300
PWELEPLDAA NPQPPQPPLR NKRPRLPASP SVSIILEFYI SKLVLFVSGL WKSPAEPSQT  360
LSFSEPQQAR GLFTNSRFSS SSNVAFNQFY WPARESREDS YAGSTNKVTV ERKLEPAAGG  420
CRLFGIEIRS AVDETQPVLT VSGDGYDQTA ASVDVDSGEL SQPSNINNSG AQAASSERAL  480
LETQSRQVRS CTKVIMTGMA VGRAVDLTKL YGYVDLHCKL EEMFDIQGEL CSTLKKWQVV  540
YADEEDDMML VGDDPWDKEA FWHFVTFSRQ LFYARTGEIG HLCLSFPEVQ CELLSTDSAA  600
AKQNLNHRAN PAESGSRNPL PKSEPKAEAA QDVLSKI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-16413091357Auxin response factor 1
4ldw_A1e-16413091357Auxin response factor 1
4ldw_B1e-16413091357Auxin response factor 1
4ldx_A1e-16413091357Auxin response factor 1
4ldx_B1e-16413091357Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00097PBMTransfer from AT1G59750Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2516660.0AK251666.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf119n03, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020162394.10.0auxin response factor 9
SwissprotQ0JCZ40.0ARFI_ORYSJ; Auxin response factor 9
TrEMBLM8CTG90.0M8CTG9_AEGTA; Auxin response factor
STRINGEMT270610.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108236116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.30.0auxin response factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]