PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT25952
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family ARF
Protein Properties Length: 394aa    MW: 43813.6 Da    PI: 6.7841
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT25952genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B330.85e-10171231156
               EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEET CS
        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkks 56 
               f+k+lt sd++++g +++p++ ae++      +++ + s++l+ +d++g +W++++iyr++ 
  EMT25952 171 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyNLQRP-SQELVAKDLHGTEWRFRHIYRGTA 231
               99****************************9966654.569****************99876 PP
2Auxin_resp107.41.6e-35301381182
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                 +a+a++ ks+F+++YnPr ++seF+v+++k+++++++++svGmRfkm++e+ed+serr +Gt++g +++dp + ++SkW++L
    EMT25952 301 VAQAVAVKSIFHIYYNPRLCESEFIVPYWKFMRSFSQPFSVGMRFKMKYENEDASERRSTGTITGSRESDP-KSHGSKWKCL 381
                 68999******************************************************************.*********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019367.72E-29164230IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.2E-21166230IPR015300DNA-binding pseudobarrel domain
CDDcd100172.51E-10169249No hitNo description
PfamPF023625.0E-8171230IPR003340B3 DNA binding domain
PfamPF065074.1E-29301381IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MIGIDLNTVE GDEEEGGPSA EPPRGTVCLE LWHACAGPVG PLPRKGSAVV YLPEGHLEYI  60
GEAAGAVAAV PPHVFCRVVD VNLQVRARAR GLVLVLYGVR RDHNVFEVLT DRACSLQADP  120
ATDEVYAQVS LVVDNEEAKR RMRQGESEEA CEGDGEDTDA AKRRARMPHM FCKTLTASDT  180
STHGGFSVPR RAAEDCFPPL DYNLQRPSQE LVAKDLHGTE WRFRHIYRGT ATAIHWLIAY  240
SSGSAYLSGF PPEIYRMLRH IMRGEDGVLR LGVRRAAQLK NVSPVPALFN QDSSLSSLGN  300
VAQAVAVKSI FHIYYNPRLC ESEFIVPYWK FMRSFSQPFS VGMRFKMKYE NEDASERRST  360
GTITGSRESD PKSHGSKWKC LVLADYSMPS LNFE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A6e-712738119331Auxin response factor 1
4ldy_B6e-712738119331Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin under dark condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3761291e-175AY376129.1 Triticum aestivum ETTIN-like auxin response factor (ETT2-alpha) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020160561.10.0auxin response factor 2-like isoform X1
RefseqXP_020160562.10.0auxin response factor 2-like isoform X2
SwissprotQ0JKI91e-164ARFB_ORYSJ; Auxin response factor 2
TrEMBLM8CFM40.0M8CFM4_AEGTA; Auxin response factor
STRINGEMT259520.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25373580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.11e-103ARF family protein
Publications ? help Back to Top
  1. Khanday I,Yadav SR,Vijayraghavan U
    Rice LHS1/OsMADS1 controls floret meristem specification by coordinated regulation of transcription factors and hormone signaling pathways.
    Plant Physiol., 2013. 161(4): p. 1970-83
    [PMID:23449645]