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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT22525 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | ARF | ||||||||
Protein Properties | Length: 625aa MW: 68097.9 Da PI: 8.9622 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73.2 | 3.2e-23 | 60 | 159 | 3 | 99 |
EE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 3 kvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 k+lt+sd+++ g +++p+ +ae++ ++ + t+ +d +g++W++++iyr++++r++lt+GW+ Fv++++L +gD++vF +++ +el+v++ EMT22525 60 KTLTQSDANNGGGFSVPRYCAETIfpkldyrADPPVQ--TVLAKDVHGEVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFL--RTEHGELCVGI 156 89**************************996555555..8999*********************************************..55999****** PP E-S CS B3 97 frk 99 +r+ EMT22525 157 RRA 159 *97 PP | |||||||
2 | Auxin_resp | 118.8 | 4.3e-39 | 215 | 298 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a+++++FevvY+Prast+eFvvk++ +++a+++++++GmRfkmafetedss++++ +Gt+++v+ +dp+rWpnS+Wr+L+ EMT22525 215 AATLAANSQPFEVVYYPRASTPEFVVKAAAMQAAMRIHWCPGMRFKMAFETEDSSRISWfMGTISSVQVADPLRWPNSPWRLLQ 298 68899*****************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 5.36E-28 | 50 | 162 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 7.9E-35 | 57 | 161 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.365 | 58 | 160 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.3E-19 | 58 | 160 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.4E-21 | 60 | 159 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.06E-20 | 60 | 158 | No hit | No description |
Pfam | PF06507 | 2.9E-33 | 215 | 298 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 18.816 | 530 | 610 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007389 | Biological Process | pattern specification process | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 625 aa Download sequence Send to blast |
MTENAQQCFP EGRCPGPARR LLTSKSQPSL KIDVTFKCSP NLAIPFLQVP ARAKRASRAK 60 TLTQSDANNG GGFSVPRYCA ETIFPKLDYR ADPPVQTVLA KDVHGEVWKF RHIYRGTPRR 120 HLLTTGWSTF VNQKKLVAGD SIVFLRTEHG ELCVGIRRAK RVTCGGMECI SGWNAPGYGG 180 FSAFLKDEEN KMMNGGPAGY VKGRGKVKIA DVAEAATLAA NSQPFEVVYY PRASTPEFVV 240 KAAAMQAAMR IHWCPGMRFK MAFETEDSSR ISWFMGTISS VQVADPLRWP NSPWRLLQVT 300 WDEPDLLQNV KCVSPWLVEL VSSIPPIHLG PFSPPRKKLR VPQHPDFPLD GHLFNPIFHG 360 NPLGPSNSPL CCYSDNNSPA GIQGARHAQF GLPLTDHQLN KLHLGLFHGG GFNRLDALTP 420 SSRIPKGFVL SSAPAHDSVS CLLTIGTPQS TEKSVDRKTP HIMLFGKAIL TEQQMTSSGS 480 RETLSSGATG NSSPISTGLK AGNASDGSGS SICIGFSSQG HEASDLGLEA GHCKVFMESE 540 DVGRTIDLSV FGSYDELYGR LADMFGIEKE EIISHLRYRD TAGAVMHTGG LPFSDFMKVA 600 RRLTIISGEK GGLAKPLIEC MVQRV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-58 | 60 | 323 | 160 | 392 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00461 | DAP | Transfer from AT4G30080 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK363500 | 0.0 | AK363500.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2016A11. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020172888.1 | 0.0 | auxin response factor 22-like | ||||
Swissprot | Q9AV47 | 0.0 | ARFV_ORYSJ; Auxin response factor 22 | ||||
TrEMBL | M8BC98 | 0.0 | M8BC98_AEGTA; Auxin response factor | ||||
STRING | EMT22525 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP516 | 37 | 152 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30080.1 | 0.0 | auxin response factor 16 |
Publications ? help Back to Top | |||
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