PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT22165
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family M-type_MADS
Protein Properties Length: 173aa    MW: 19275.8 Da    PI: 9.6996
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT22165genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF58.31e-182262545
              SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
    SRF-TF  5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
              +k  rqvtfskRr+g++KK +EL +LC+a+va ++fs+ g+
  EMT22165 22 DKNSRQVTFSKRRAGLFKKCSELAILCGARVAAVVFSEAGN 62
              5788**********************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006622.4131070IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.19E-221080IPR002100Transcription factor, MADS-box
SMARTSM004322.1E-241069IPR002100Transcription factor, MADS-box
PRINTSPR004049.9E-161232IPR002100Transcription factor, MADS-box
PfamPF003194.2E-212264IPR002100Transcription factor, MADS-box
PRINTSPR004049.9E-163247IPR002100Transcription factor, MADS-box
PRINTSPR004049.9E-164768IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MARPRGTTST GRHRIEMTLR PDKNSRQVTF SKRRAGLFKK CSELAILCGA RVAAVVFSEA  60
GNAFALGSPS MEAVPRRFDD GNDAGALVPA AEDDDREALE ELYRAREATA EQVASEIKRM  120
NTIGDKVVKA QMGRRYWWEA DVEALGEAEL PEFARALDRL RANVRRHADK LRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020170509.11e-122agamous-like MADS-box protein AGL61
TrEMBLM8BBC61e-122M8BBC6_AEGTA; Agamous-like MADS-box protein AGL61
STRINGEMT221651e-123(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28333088
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.14e-24AGAMOUS-like 61