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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT19609 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | ARF | ||||||||
Protein Properties | Length: 1151aa MW: 128667 Da PI: 6.6441 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 72.1 | 7.1e-23 | 123 | 224 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f+k+lt sd++++g +++p++ ae++ + +++ ++++ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F ++++++l++ EMT19609 123 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QEIQARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVIFV--RDERQQLLL 219 99*****************************954.4444.48************************************************..4577788** PP EEE-S CS B3 95 kvfrk 99 +++r+ EMT19609 220 GIRRA 224 *9997 PP | |||||||
2 | Auxin_resp | 117.7 | 9.4e-39 | 249 | 332 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPras++eFv++++k++ka++ +++s+GmRf+m+fete+ +rr++Gt++g++dldpvrW+nS+Wr+L+ EMT19609 249 AAHAAANNSPFTIFYNPRASPTEFVIPFAKYQKAVYgNQLSLGMRFRMMFETEELGTRRYMGTITGINDLDPVRWKNSQWRNLQ 332 79**********************************9*********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.35E-42 | 112 | 252 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.2E-41 | 115 | 238 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.14E-19 | 122 | 214 | No hit | No description |
SMART | SM01019 | 7.4E-23 | 123 | 225 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.899 | 123 | 225 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.6E-21 | 123 | 224 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.3E-33 | 249 | 332 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 5.2E-10 | 1015 | 1102 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 27.166 | 1017 | 1101 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 3.04E-7 | 1032 | 1096 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1151 aa Download sequence Send to blast |
MGFRCVFSGE KKAPAINSDL WHACAGPLVQ LPPAGSLVVY FPQGHSEQVA ASMQKDVDAH 60 VPNYPNLPSK LICLLHNITL HADLETDEVY AQMTLQPVTS YGKEALQLSE LALKQARPQN 120 EFFCKTLTAS DTSTHGGFSV PRRAAEKIFP PLDFSMQPPA QEIQARDLHD NVWTFRHIYR 180 GQPKRHLLTT GWSLFVSGKR LFAGDSVIFV RDERQQLLLG IRRANRQPTN ISSSVLSSDS 240 MHIGILAAAA HAAANNSPFT IFYNPRASPT EFVIPFAKYQ KAVYGNQLSL GMRFRMMFET 300 EELGTRRYMG TITGINDLDP VRWKNSQWRN LQVGWDESAA GERRNRVSIW EIEPVAAPFF 360 ICPPPFFGAK RPRQLDDESS EMENLLKRAM PWLGEEICIK DPQTQNTIMP GLSLVQWMNM 420 NMQQSSSFAN TAMQSEYLRS ITNPSMQNIG SGDLSRQLCL QNQLLQQNNM QFNTPKLPQQ 480 MQPNNELSKA ALPLNQNGAS IKPEEQTQDA SNFQRQQQSM NYALPLSQAQ TNLAQAQVLI 540 QSQMQQQQQQ PHISQNQLPA VSQPLLSHQQ QQHHHQQQQQ QHQQQEQQHQ QQQQQQKFLQ 600 QQQLLLQQQQ LQQHQHQLQQ QQQQQLGKMP AQLPNLSNQQ LQLSDQQLQL QLLQKLQQQQ 660 QSLLSQPGVT LAQLPLIQEQ QKLLMDMQQQ LSSSHSLSQQ QMMPQQSTKI PSQVASLPPP 720 MQPDTTHQKL PQKQALPADT LEAAIPTTTS HKFSSANGSP LRMPGATHSV VTEEIPSCST 780 SPSTANGNHL LQPVPGRDQY SSMINTEKAP HSTAPMSVPS SLDAVTGAQR MTKELPKLNS 840 NVKQNMMPSK LPNGGAGPQN FANNAPPTDY LETASSATSV WLSQADGLLH PNFPMTNFSQ 900 QQLFKDAPPD TEIPAEIPSN NALFGISNDG HVGFPMVTDD FLTNGIDAVK YENHISTDID 960 NNYRIPKDAQ QEISSSMVSQ SFGASDMAFN SIDSGINDGA FLNKSSWPPA PPVKRMRTFT 1020 KVYKRGAVGR SIDISQYAGY EELKHALARM FSIEGQLEER QRIGWKLVYR DHEDDILLLG 1080 DDPWEEFVNC VKCIRILSPQ EVQQMSLDGD LGSSVVPNQA CSSSEGGGNA WRARCDQNSG 1140 NPSTGSYDQF E |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-168 | 8 | 353 | 44 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK367496 | 0.0 | AK367496.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2058D09. | |||
GenBank | AK369713 | 0.0 | AK369713.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2096H17. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020163202.1 | 0.0 | auxin response factor 19-like | ||||
Swissprot | Q0D9R7 | 0.0 | ARFS_ORYSJ; Auxin response factor 19 | ||||
TrEMBL | R7WG30 | 0.0 | R7WG30_AEGTA; Auxin response factor | ||||
STRING | EMT19609 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1409 | 35 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19220.1 | 0.0 | auxin response factor 19 |
Publications ? help Back to Top | |||
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