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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT18418 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | ARF | ||||||||
Protein Properties | Length: 858aa MW: 94821.3 Da PI: 9.07 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 77.7 | 1.2e-24 | 336 | 437 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f+k+lt sd++++g +++p++ ae++ + + s++l+ +d++g +W++++iyr++++r++lt+GW++Fv+ ++L +gD v+F + +++el++ EMT18418 336 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyqQ-IR-PSQELVAKDLHGAKWRFRHIYRGQPRRHLLTTGWSSFVNKKKLVSGDAVLFL--RGDDGELRL 432 99****************************9843.43.4569************************************************..3489999** PP EEE-S CS B3 95 kvfrk 99 +v+r+ EMT18418 433 GVRRA 437 *9986 PP | |||||||
2 | Auxin_resp | 110.3 | 1.9e-36 | 462 | 542 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +a++++++svF+++YnPra++seF+++++k++k+l++++++GmRfk+++ +ed++err sG+++g++d+dp+rW++SkW+sL EMT18418 462 VANSLKHRSVFHICYNPRAAASEFIIPYWKFLKSLNRPFCIGMRFKIQYGSEDVNERR-SGMITGINDVDPIRWTGSKWKSL 542 68999*****************************************************.9********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.05E-44 | 320 | 475 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.5E-38 | 332 | 437 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.33E-22 | 334 | 436 | No hit | No description |
Pfam | PF02362 | 1.1E-22 | 336 | 437 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.4E-24 | 336 | 438 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.225 | 336 | 438 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.1E-29 | 463 | 542 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0010050 | Biological Process | vegetative phase change | ||||
GO:0010158 | Biological Process | abaxial cell fate specification | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 858 aa Download sequence Send to blast |
MSNPTTINCL YNMKTVARDF ALQLWRVASP YPRNHVHLTV PSQPRSPRRT LEATFTSPLE 60 EDEVDIEGGS SFFADELATQ ANANKKRQSI QTKAYTKDED KLLCECWRDI GQDPKIGAEQ 120 KAPTFWLSVH RQFHECKKFA PYKMESKRGW VSLSKRRRVI QQECNKFCAT LESIEGRPMS 180 GFGIKDMAFQ ALEAFKAQHG NKPSTLTYCW MVIKGDEKFK EQYVALRKSG GLEAVEEHGV 240 GEKPRPRGKT NSKTDDERAA SSNQQKANKM RVCLDRRVAL KSKEKADPAT DEVYARLALV 300 AEGEVFEKNM GGGRFEGEDD MEDGDGERKS RMLHMFCKTL TASDTSTHGG FSVPRRAAED 360 CFPPLDYQQI RPSQELVAKD LHGAKWRFRH IYRGQPRRHL LTTGWSSFVN KKKLVSGDAV 420 LFLRGDDGEL RLGVRRAIQL KNEALLKAFN SNSSKIHTLS AVANSLKHRS VFHICYNPRA 480 AASEFIIPYW KFLKSLNRPF CIGMRFKIQY GSEDVNERRS GMITGINDVD PIRWTGSKWK 540 SLLVRWEDGT DCNSQNRLSP WEIEIVGGSV SIAQSLSASS SKRTKLCPQG NVDVPTLYGN 600 GRPDSVGADK LPRVLQGQEL MGSGTHRVTC PPQPGGATEF RRSDGTGFLA NTRSCMLSGP 660 ASRFPPQSPY FAYQPVGFGE SVGFPEVLQG QEVSQTVPLF QGIVSDTCSA KGGYGLYNYM 720 RPSSAMNGGF SSAAQGYPLS LSTPPPAEAA SPSSAALWLA SKSNEEAANG SQLNQFGIPK 780 SPGDGAAKLG SDGRKVARTS CMLFGFSLTE KMLPTEEDCA KEGSHEADCQ NPRMLDLFGY 840 NRATPGALHA LCAAPLGI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldy_A | 4e-78 | 279 | 564 | 77 | 353 | Auxin response factor 1 |
4ldy_B | 4e-78 | 279 | 564 | 77 | 353 | Auxin response factor 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 154 | 158 | KRRRV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00021 | PBM | Transfer from AT2G33860 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY376130 | 0.0 | AY376130.1 Triticum aestivum ETTIN-like auxin response factor (ETT-L alpha) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020175130.1 | 0.0 | auxin response factor 3-like | ||||
Swissprot | Q5JMM1 | 0.0 | ARFC_ORYSJ; Auxin response factor 3 | ||||
TrEMBL | R7WA27 | 0.0 | R7WA27_AEGTA; Auxin response factor | ||||
STRING | EMT18418 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5113 | 27 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33860.1 | 1e-121 | ARF family protein |
Publications ? help Back to Top | |||
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