PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT17168

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

ARF

Protein Properties

Length: 910aa MW: 102024 Da PI: 5.6293

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT17168	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	73.3	3e-23	133	234	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f+k+lt sd++++g +++ +++a+e+ +++++ ++l+ +d++g +W++++i+r++++r++l++GW+ Fv++++L +gD ++F + +++el+v EMT17168 133 FCKTLTASDTSTHGGFSVLRRHADEClppldmtQSPPT--QELVAKDLHGMEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL--RGESGELRV 229 99***************************7555544..58********************************************..449999* PP EEE-S CS B3 95 kvfrk 99 +v+r+ EMT17168 230 GVRRA 234 **996 PP
2	Auxin_resp	106.7	2.7e-35	259	340	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++tk++F+v+Y+Pr+s+seF+++++k+++++k+ +s+G+Rfkm+fe+e+++e+r++Gt+vg +ld+ Wp+S WrsLk EMT17168 259 AWHAINTKTMFTVYYKPRTSRSEFIIPYDKYMESVKNIYSIGTRFKMRFEGEEAPEQRFTGTIVGSDNLDQ-LWPESSWRSLK 340 89****************************************************************999.9******96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.0E-39	127	248	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.57E-38	127	262	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.34E-20	131	233	No hit	No description
SMART	SM01019	4.2E-23	133	235	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.9E-21	133	234	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	11.843	133	235	IPR003340	B3 DNA binding domain
Pfam	PF06507	6.0E-32	259	340	IPR010525	Auxin response factor
Pfam	PF02309	1.9E-5	677	732	IPR033389	AUX/IAA domain
SuperFamily	SSF54277	4.81E-13	690	773	No hit	No description
PROSITE profile	PS51745	25.447	696	789	IPR000270	PB1 domain
Pfam	PF02309	1.6E-8	736	781	IPR033389	AUX/IAA domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009734	Biological Process	auxin-activated signaling pathway
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 910 aa Download sequence Send to blast
MVSSSSFSFS CLMSRGFGGA GDPLYDELWH ACAGPLVTVP RVGDMVYYFP QGHIEQVEAS 60 MNQVAANQMR LYDLPSKLLC RVLNVELKAE ADTDEVYAQV MLMPEPEQSE TTTEKSSPAT 120 GGATPARPAV RSFCKTLTAS DTSTHGGFSV LRRHADECLP PLDMTQSPPT QELVAKDLHG 180 MEWRFRHIFR GQPRRHLLQS GWSVFVSSKR LVAGDAFIFL RGESGELRVG VRRAMRQLSN 240 IASSVISSHS MHLGVLATAW HAINTKTMFT VYYKPRTSRS EFIIPYDKYM ESVKNIYSIG 300 TRFKMRFEGE EAPEQRFTGT IVGSDNLDQL WPESSWRSLK VRWDESSTIP RPDRVSPWEI 360 EPASSPPVNP LPISRPKRSR PNVPPASPES SVRTKEGATK ADMDCAQAQR NQNNTALPGQ 420 EQRSNKLTDI NDFDASVQKP MMWSPPPPPN IGKNNPLTFQ QRPSVHNSFQ LGRRETDFKD 480 ASSGAQPFGD SLGFFMQTTF DEAPNRLSSF KNQFQDHSYA RQYADPYLFM HQQPSLTVES 540 SRKMHTENNE MHFWNGPSTA YSNSRDQAQD FRFTEHPSNW LSPQFFRAEQ PRVIRPHASI 600 APIELEKTTE GSDFKIFGFK VDTASAGFNH LNSPMAGTHE PVLQTQPSVS LDHLQTDCSP 660 EVSLSIAGTT ENEKNMQQCP QSSKDVQSKS HGASTRSCTK VHKQGVALGR SVDLSKFVDY 720 DELTAELDKM FEFDGELLSS NKNWQIVYTD NEGDMMLVGD DPWEEFCSIV RKICIYTKEE 780 VQKMNSKPSG PKKEEGSVDG DGATEKAHLP ASSDLNSSQL VDIATSILYF SYFYVLKYEE 840 EEGETEPALP VAEAGFGMPD ALGKFKVAQA EQALEQQTIL DSIRLEAEVE ANRRYIHQQR 900 AETDAIFTDM

Sequence ? help Back to Top

Protein Sequence Length: 910 aa Download sequence Send to blast

MVSSSSFSFS CLMSRGFGGA GDPLYDELWH ACAGPLVTVP RVGDMVYYFP QGHIEQVEAS  60
MNQVAANQMR LYDLPSKLLC RVLNVELKAE ADTDEVYAQV MLMPEPEQSE TTTEKSSPAT  120
GGATPARPAV RSFCKTLTAS DTSTHGGFSV LRRHADECLP PLDMTQSPPT QELVAKDLHG  180
MEWRFRHIFR GQPRRHLLQS GWSVFVSSKR LVAGDAFIFL RGESGELRVG VRRAMRQLSN  240
IASSVISSHS MHLGVLATAW HAINTKTMFT VYYKPRTSRS EFIIPYDKYM ESVKNIYSIG  300
TRFKMRFEGE EAPEQRFTGT IVGSDNLDQL WPESSWRSLK VRWDESSTIP RPDRVSPWEI  360
EPASSPPVNP LPISRPKRSR PNVPPASPES SVRTKEGATK ADMDCAQAQR NQNNTALPGQ  420
EQRSNKLTDI NDFDASVQKP MMWSPPPPPN IGKNNPLTFQ QRPSVHNSFQ LGRRETDFKD  480
ASSGAQPFGD SLGFFMQTTF DEAPNRLSSF KNQFQDHSYA RQYADPYLFM HQQPSLTVES  540
SRKMHTENNE MHFWNGPSTA YSNSRDQAQD FRFTEHPSNW LSPQFFRAEQ PRVIRPHASI  600
APIELEKTTE GSDFKIFGFK VDTASAGFNH LNSPMAGTHE PVLQTQPSVS LDHLQTDCSP  660
EVSLSIAGTT ENEKNMQQCP QSSKDVQSKS HGASTRSCTK VHKQGVALGR SVDLSKFVDY  720
DELTAELDKM FEFDGELLSS NKNWQIVYTD NEGDMMLVGD DPWEEFCSIV RKICIYTKEE  780
VQKMNSKPSG PKKEEGSVDG DGATEKAHLP ASSDLNSSQL VDIATSILYF SYFYVLKYEE  840
EEGETEPALP VAEAGFGMPD ALGKFKVAQA EQALEQQTIL DSIRLEAEVE ANRRYIHQQR  900
AETDAIFTDM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4ldv_A	1e-169	18	365	13	357	Auxin response factor 1
4ldw_A	1e-169	18	365	13	357	Auxin response factor 1
4ldw_B	1e-169	18	365	13	357	Auxin response factor 1
4ldx_A	1e-169	18	365	13	357	Auxin response factor 1
4ldx_B	1e-169	18	365	13	357	Auxin response factor 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK372798	0.0	AK372798.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3013C04.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020197968.1	0.0	auxin response factor 4-like
Swissprot	Q5JK20	0.0	ARFD_ORYSJ; Auxin response factor 4
TrEMBL	N1QYI4	0.0	N1QYI4_AEGTA; Auxin response factor
STRING	EMT17168	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1178	36	111

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62000.3	0.0	auxin response factor 2

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Song X, et al. Rice RNA-dependent RNA polymerase 6 acts in small RNA biogenesis and spikelet development. Plant J., 2012. 71(3): p. 378-89 [PMID:22443269] Kishimoto N, et al. Identification of the duplicated segments in rice chromosomes 1 and 5 by linkage analysis of cDNA markers of known functions. Theor. Appl. Genet., 1994. 88(6-7): p. 722-6 [PMID:24186168]