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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT16165 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | ARF | ||||||||
Protein Properties | Length: 1074aa MW: 119383 Da PI: 6.0934 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 64.7 | 1.4e-20 | 132 | 224 | 1 | 90 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+k+lt sd++++g +++p++ ae++ +++++++ +l+ +d + ++W++++i+r++++r++lt+GW+ Fv+ ++L +gD+v+F + s + EMT16165 132 FCKTLTASDTSTHGGFSVPRRAAEKIfpsldfSLQPPCQ-ELQARDIHDNVWTFRHIFRGQPKRHLLTTGWSLFVSGKKLFAGDSVIFVRA--SPT 224 99******************************9999986.************************************************943..333 PP | |||||||
2 | Auxin_resp | 86.7 | 4.5e-29 | 220 | 286 | 18 | 83 |
Auxin_resp 18 rastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 ras++eFv++++k++ka++ +++s+GmRf+m+ ete+ +rr++Gt++g+sdldpvrW+nS+WrsL+ EMT16165 220 RASPTEFVIPFAKYQKAMYsNQISLGMRFRMMCETEELGTRRYMGTITGISDLDPVRWKNSQWRSLQ 286 899***************989********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.05E-36 | 121 | 226 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.6E-33 | 124 | 226 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.43E-18 | 131 | 228 | No hit | No description |
Pfam | PF02362 | 2.2E-18 | 132 | 224 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.7E-18 | 132 | 233 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.673 | 132 | 234 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.3E-24 | 220 | 286 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 4.1E-8 | 938 | 1026 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 26.947 | 941 | 1025 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 2.65E-6 | 955 | 1020 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1074 aa Download sequence Send to blast |
MAQSPASSAV AAPAPCEGER KAPAINGELW HACAGPLVSL PPVGSLVVYF PQGHSEQVAA 60 SMQKDVEAHV PSYPNLPSKL ICLLHSVTLQ ADPDTDEVYA QMTLQPVNTY AKEALQLSEL 120 ALRQARPQME FFCKTLTASD TSTHGGFSVP RRAAEKIFPS LDFSLQPPCQ ELQARDIHDN 180 VWTFRHIFRG QPKRHLLTTG WSLFVSGKKL FAGDSVIFVR ASPTEFVIPF AKYQKAMYSN 240 QISLGMRFRM MCETEELGTR RYMGTITGIS DLDPVRWKNS QWRSLQVGWD ESAAGERRNR 300 VSIWEIEPLA APFFICPQPF FGVKRPRQLD DESLEMESLM KRAMPWLGEE ICIKDPQTQS 360 ATMPGLSLVQ WMNMNRQQSS SLASTAMQSE YLRSASNPAM QNIGAADLAR QLYMQNHLLQ 420 QNSMQFNPPK LHQQMKPIND LSNAALPLNQ LGAIRNHQDQ KQDQQRQQQS GIQAIPLSQA 480 QAQTNIVQAQ VILQNQMQQQ QQQKQPPPSP TQNQHGASGQ HLLQSHQLQD QNLQMQQQQL 540 LLHQQLQQQQ QLNKLPGQLA NLASQQTQLS DQELHLQLLQ KLQQQSLMSQ SAVTLSRLPI 600 IQEQQNFLVD MQQQLSNSHS LAQQQVMPQQ DCRTSSSQTT QLPPPIQQEQ QQQKPSQKQV 660 APTYVSEAAF AQISSTSVIP KTGNSMIVPG AAQSAVTEEI PSCSTSPSTA NGNHLVQPTI 720 GRNDHCKIST EKVPHSIAQM SILTPIEAVS VTPVTTKELP KLNNGVKSSA ITSKLPNVVS 780 GLQNFMNNAL PTDNLETASS ATSLWPSQTD GLLHQGFATS NFNQHQMFKD ELPDVEIQGV 840 DPSNSALFGM NNDGPLGFPM ETEGLLENAL DSVKYQNHFS TDDENNYQMQ KDARQEISTS 900 MVSQSFGQSD MAFNSIDSAI NDGALMNRSS WPPAAPPQRM RTFTKVYKRG AVGRSIDIGR 960 FSGYGELNQA LARMFGIEGQ LEDRQRIGWK LVYTDHEDDV LLLGDDPWEE FVNCVKCIRI 1020 LSPQEVQKMS LDGDLGSNVL PNQACSSSDG GNTWKPRYEQ NSGNPSIGPY DQFE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-120 | 18 | 307 | 45 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020155071.1 | 0.0 | auxin response factor 5-like isoform X1 | ||||
Swissprot | Q6Z2W3 | 0.0 | ARFE_ORYSJ; Auxin response factor 5 | ||||
TrEMBL | N1QYK1 | 0.0 | N1QYK1_AEGTA; Auxin response factor | ||||
STRING | EMT16165 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1409 | 35 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G20730.2 | 1e-163 | ARF family protein |