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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EMT12434 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
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Family | ARF | ||||||||
Protein Properties | Length: 629aa MW: 69745 Da PI: 8.9923 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 59.5 | 5.7e-19 | 64 | 135 | 25 | 99 |
TT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 25 ehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +++++ + s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F + +++el+++v+r+ EMT12434 64 DYSQQ-RPSQELVAKDLHGTEWKFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFL--RGDDGELRLGVRRS 135 44333.34679************************************************..3489999***9986 PP | |||||||
2 | Auxin_resp | 82.6 | 8.9e-28 | 195 | 258 | 18 | 82 |
Auxin_resp 18 rastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 r s+seF+v+++k+ k++++++svG Rfkm++e+ed++err++G+++g+ d+dp W++SkW++L EMT12434 195 RLSQSEFIVPYWKFTKSFSQPFSVGLRFKMRYESEDAAERRYTGIITGTGDADP-MWRGSKWKCL 258 789***************************************************.9********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 1.6E-7 | 38 | 136 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.35 | 42 | 136 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.83E-23 | 57 | 150 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.96E-14 | 59 | 134 | No hit | No description |
Pfam | PF02362 | 2.1E-16 | 64 | 135 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 5.3E-24 | 64 | 136 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF06507 | 1.5E-22 | 195 | 258 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 629 aa Download sequence Send to blast |
MPRKGGVVVY LPQGHLDHLG DAPAPSPAAV PPHVFCRVVD VTLHADASTD EVYAQLSLLP 60 ENEDYSQQRP SQELVAKDLH GTEWKFRHIY RGQPRRHLLT TGWSAFVNKK KLVSGDAVLF 120 LRGDDGELRL GVRRSVQLKN GSAFPALYSQ CSNLGTLANV AHAVATKSMF QIFYNPRMLH 180 YMFFLATQVP AEISRLSQSE FIVPYWKFTK SFSQPFSVGL RFKMRYESED AAERRYTGII 240 TGTGDADPMW RGSKWKCLLL FTVNAALALL QYTFLFCTVK VRWDDDGEFR RPNRVSPWEI 300 ELTSSASGSH LAAPTSKRMK PYLPHANPEF TVPHGGGRPD FAESAQLRKV LQGQELLGYR 360 THDGTAVATS QPCEARNLQY IDERGCSNNV SNNVLGGVPS HGVRTPLGIP YHCSGFGESQ 420 RFQKVLQGQE VFRPYRGSLV DARMRNGGFQ QQDGPYASGL LDKWRAQQQH AFGFGPPAPV 480 LPSQPSLSPP SVLMFQQADP KVSRFEFGHG HLDKNVDDPY ARFVSAEGIG RGEQTLSLRP 540 HLGSEVIDSR VAVENKGVAP TNSCKIFGIS LAEKVRARDE MGCDDGGANY PSPTQPLKQQ 600 VPKSLGNSCA TVHEQRPVVG RAIDVQQWI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 5e-70 | 1 | 309 | 34 | 361 | Auxin response factor 1 |
4ldw_A | 5e-70 | 1 | 309 | 34 | 361 | Auxin response factor 1 |
4ldw_B | 5e-70 | 1 | 309 | 34 | 361 | Auxin response factor 1 |
4ldx_A | 6e-70 | 1 | 309 | 34 | 361 | Auxin response factor 1 |
4ldx_B | 6e-70 | 1 | 309 | 34 | 361 | Auxin response factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY376128 | 0.0 | AY376128.1 Triticum aestivum ETTIN-like auxin response factor (ETT1-alpha) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020158279.1 | 0.0 | auxin response factor 15-like | ||||
Swissprot | Q8S985 | 0.0 | ARFO_ORYSJ; Auxin response factor 15 | ||||
TrEMBL | M8C030 | 0.0 | M8C030_AEGTA; Auxin response factor | ||||
STRING | EMT12434 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2537 | 35 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33860.1 | 3e-88 | ARF family protein |
Publications ? help Back to Top | |||
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