![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | EMT09779 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
|
||||||||
Family | ARF | ||||||||
Protein Properties | Length: 830aa MW: 93003 Da PI: 6.4833 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 72.1 | 7e-23 | 160 | 261 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f+k+lt sd++++g +++ +++a+e+ +++++ ++l+ +d++g W++++i+r++++r++l++GW+ Fv++++L +gD ++F + +++el+v EMT09779 160 FCKTLTASDTSTHGGFSVLRRHADEClppldmtQSPPT--QELVAKDLHGMDWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL--RGESGELRV 256 99*****************************7555544..58************************************************..449999*** PP EEE-S CS B3 95 kvfrk 99 +v+r+ EMT09779 257 GVRRA 261 **996 PP | |||||||
2 | Auxin_resp | 111.2 | 1.1e-36 | 286 | 367 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha++tks+F+v+Y+Pr+s+seF+++++++++++k+++s+GmRf+m+fe+e+++e+r++Gt+vg ++ld+ Wp+S+WrsLk EMT09779 286 AWHAINTKSMFTVYYKPRTSPSEFIIPYDQYMESVKNNYSIGMRFRMRFEGEEAPEQRFTGTIVGSENLDQ-LWPESNWRSLK 367 89******************************************************************999.9********96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 6.8E-40 | 153 | 289 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.4E-39 | 153 | 275 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.12E-19 | 158 | 260 | No hit | No description |
SMART | SM01019 | 9.5E-22 | 160 | 262 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.0E-20 | 160 | 261 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.702 | 160 | 262 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.3E-33 | 286 | 367 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 1.7E-12 | 692 | 793 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 1.67E-12 | 703 | 786 | No hit | No description |
PROSITE profile | PS51745 | 24.728 | 709 | 802 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0008285 | Biological Process | negative regulation of cell proliferation | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009911 | Biological Process | positive regulation of flower development | ||||
GO:0010047 | Biological Process | fruit dehiscence | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0010227 | Biological Process | floral organ abscission | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 830 aa Download sequence Send to blast |
MVIFEREEGR GEGAWRACGG RAGATDWLAG WRVPAGNEWG WVVKSCPVGD PLYDELWHAC 60 AGPLVTVPRV GDLVFYFPQG HIEQVEASMN QVAGNQMRLY DLPSKLLCRV INVELKAEAD 120 TDEVYAQVML MPEPEQNEMA VDKSTSTTGA TPPRPAVRSF CKTLTASDTS THGGFSVLRR 180 HADECLPPLD MTQSPPTQEL VAKDLHGMDW RFRHIFRGQP RRHLLQSGWS VFVSSKRLVA 240 GDAFIFLRGE SGELRVGVRR AMRQLSNVPS SVISSHSMHL GVLATAWHAI NTKSMFTVYY 300 KPRTSPSEFI IPYDQYMESV KNNYSIGMRF RMRFEGEEAP EQRFTGTIVG SENLDQLWPE 360 SNWRSLKVRW DEPSTIPRPD RVSPWKIEPA SSPPVNPLPL SRVKRPRPNV PPVSPESSVL 420 TKEGATKIDM DSAQAQQRNQ NSMVLQGQEH MTLRTNNLTG SNESDATVQK PMMWSPSPNI 480 GKNHASAFQQ RPSMDNWMQL GRCDASSGAQ SFGDSQGFFM QTFDEAPNRH GSFKNQFQDH 540 SSARHFSDPY TKMQTEANEF HFWNSQSTVY GNPRDQSQGF RFEEHPSNWL RQQQFSPVEQ 600 PRVIRPHASI APVDLEKTRE GSGFKIFGFK VDTTSAPSNH LSSTTAAIHE PVLQTQASAS 660 LTQLQHAHAD CIPELSVSTA GTTENEKSIQ QTPHSSKDVQ SKSHGASTRS CTKVHKQGVA 720 LGRSVDLSKF GDYDELTAEL DRMFEFDGEL MSSNKDWQIV YTDPEGDMML VGDDPWEEFC 780 NIVRKIFIYT KEEVQKMNSK SSTPRKEEGS ADADGANEKA HLATSSHLDN |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-167 | 48 | 392 | 15 | 357 | Auxin response factor 1 |
4ldw_A | 1e-167 | 48 | 392 | 15 | 357 | Auxin response factor 1 |
4ldw_B | 1e-167 | 48 | 392 | 15 | 357 | Auxin response factor 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 403 | 407 | KRPRP |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00574 | DAP | Transfer from AT5G62000 | Download |
![]() |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK364852 | 0.0 | AK364852.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2028N02. | |||
GenBank | AK368785 | 0.0 | AK368785.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2079M07. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020198715.1 | 0.0 | auxin response factor 4-like | ||||
Swissprot | Q5JK20 | 0.0 | ARFD_ORYSJ; Auxin response factor 4 | ||||
TrEMBL | M8BSK7 | 0.0 | M8BSK7_AEGTA; Auxin response factor | ||||
STRING | EMT09779 | 0.0 | (Aegilops tauschii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1178 | 36 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G62000.3 | 0.0 | auxin response factor 2 |
Publications ? help Back to Top | |||
---|---|---|---|
|